Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
[HTML][HTML] Fern genomes elucidate land plant evolution and cyanobacterial symbioses
Ferns are the closest sister group to all seed plants, yet little is known about their genomes
other than that they are generally colossal. Here, we report on the genomes of Azolla …
other than that they are generally colossal. Here, we report on the genomes of Azolla …
A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
MG Johnson, L Pokorny, S Dodsworth… - Systematic …, 2019 - academic.oup.com
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
A comprehensive phylogenomic platform for exploring the angiosperm tree of life
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
[HTML][HTML] Phylogenomics and the rise of the angiosperms
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …
robust understanding of angiosperm evolution is required to explain their rise to ecological …
[HTML][HTML] Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset
The mustard family (Brassicaceae) is a scientifically and economically important family,
containing the model plant Arabidopsis thaliana and numerous crop species that feed …
containing the model plant Arabidopsis thaliana and numerous crop species that feed …
[HTML][HTML] Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
The origin and speciation of orchids
OA Pérez‐Escobar, D Bogarín… - New …, 2024 - Wiley Online Library
Orchids constitute one of the most spectacular radiations of flowering plants. However, their
origin, spread across the globe, and hotspots of speciation remain uncertain due to the lack …
origin, spread across the globe, and hotspots of speciation remain uncertain due to the lack …
A new classification of Cyperaceae (Poales) supported by phylogenomic data
Cyperaceae (sedges) are the third largest monocot family and are of considerable economic
and ecological importance. Sedges represent an ideal model family to study evolutionary …
and ecological importance. Sedges represent an ideal model family to study evolutionary …