Hybrid modelling of biological systems: current progress and future prospects

F Liu, M Heiner, D Gilbert - Briefings in Bioinformatics, 2022 - academic.oup.com
Integrated modelling of biological systems is becoming a necessity for constructing models
containing the major biochemical processes of such systems in order to obtain a holistic …

Fuzzy Petri nets for modelling of uncertain biological systems

F Liu, M Heiner, D Gilbert - Briefings in bioinformatics, 2020 - academic.oup.com
The modelling of biological systems is accompanied with epistemic uncertainties that range
from structural uncertainty to parametric uncertainty due to such limitations as insufficient …

Holistic view on the structure of immune response: petri net model

S Scharf, J Ackermann, L Bender, P Wurzel, H Schäfer… - Biomedicines, 2023 - mdpi.com
The simulation of immune response is a challenging task because quantitative data are
scarce. Quantitative theoretical models either focus on specific cell–cell interactions or have …

A role of inflammation and immunity in essential hypertension—modeled and analyzed using Petri nets

D Formanowicz, A Rybarczyk, M Radom… - International Journal of …, 2020 - mdpi.com
Recent studies have shown that the innate and adaptive immune system, together with low-
grade inflammation, may play an important role in essential hypertension. In this work, to …

Petri net recommender system to model metabolic pathway of polyhydroxyalkanoates

S Gupta, GP Singh, S Kumawat - International Journal of Knowledge …, 2019 - igi-global.com
Due to the complexity of the metabolic pathways, their modeling has been a great challenge
for the researchers. Various mathematical models have been developed and are continuing …

Hybrid modelling of biological systems using fuzzy continuous Petri nets

F Liu, W Sun, M Heiner, D Gilbert - Briefings in Bioinformatics, 2021 - academic.oup.com
Integrated modelling of biological systems is challenged by composing components with
sufficient kinetic data and components with insufficient kinetic data or components built only …

Network Modeling and Control of Dynamic Disease Pathways, Review and Perspectives

YC Hsiao, A Dutta - IEEE/ACM Transactions on Computational …, 2024 - ieeexplore.ieee.org
Dynamic disease pathways are a combination of complex dynamical processes among bio-
molecules in a cell that leads to diseases. Network modeling of disease pathways considers …

[PDF][PDF] Fuzzy coloured Petri nets for modelling biological systems with uncertain kinetic parameters

G Assaf - 2021 - opus4.kobv.de
Over the last twenty years, Petri nets have been increasingly adopted for modelling and
simulating biological systems, as they offer an intuitive and graphical approach for this …

Exploiting stochastic Petri nets with fuzzy parameters to predict efficient drug combinations for Spinal Muscular Atrophy

R Bashirov, R Duranay… - Turkish Journal of …, 2019 - journals.tubitak.gov.tr
Randomness and uncertainty are two major problems one faces while modeling nonlinear
dynamics of molecular systems. Stochastic and fuzzy methods are used to cope with these …

Modélisation de la dynamique de la réponse inflammatoire suite à un dommage tissulaire chez le mammifère adulte

L da Costa Fernandes - 2023 - theses.hal.science
La capacité de réparation des tissus à la suite d'une lésion est essentielle à la survie de tous
les organismes. Ainsi, à la suite d'une lésion tissulaire, un mécanisme de réparation est …