The genome sequence archive family: toward explosive data growth and diverse data types
T Chen, X Chen, S Zhang, J Zhu, B Tang… - Genomics …, 2021 - academic.oup.com
Abstract The Genome Sequence Archive (GSA) is a data repository for archiving raw
sequence data, which provides data storage and sharing services for worldwide scientific …
sequence data, which provides data storage and sharing services for worldwide scientific …
Database resources of the national genomics data center, China national center for bioinformation in 2022
Nucleic Acids Research, 2022 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global research …
Bioinformation (CNCB), provides a family of database resources to support global research …
KaKs_Calculator 3.0: calculating selective pressure on coding and non-coding sequences
Z Zhang - Genomics, Proteomics and Bioinformatics, 2022 - academic.oup.com
Abstract KaKs_Calculator 3.0 is an updated toolkit that is capable of calculating selective
pressure on both coding and non-coding sequences. Similar to the nonsynonymous …
pressure on both coding and non-coding sequences. Similar to the nonsynonymous …
Chromosome-level genomes of three key Allium crops and their trait evolution
F Hao, X Liu, B Zhou, Z Tian, L Zhou, H Zong, J Qi… - Nature …, 2023 - nature.com
Allium crop breeding remains severely hindered due to the lack of high-quality reference
genomes. Here we report high-quality chromosome-level genome assemblies for three key …
genomes. Here we report high-quality chromosome-level genome assemblies for three key …
Mitochondria-ER contact mediated by MFN2-SERCA2 interaction supports CD8+ T cell metabolic fitness and function in tumors
JF Yang, X Xing, L Luo, XW Zhou, JX Feng… - Science …, 2023 - science.org
Metabolic fitness of T cells is essential for their vitality, which is largely dependent on the
behavior of the mitochondria. The nature of mitochondrial behavior in tumor-infiltrating T …
behavior of the mitochondria. The nature of mitochondrial behavior in tumor-infiltrating T …
High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads
Arabidopsis thaliana is an important and long-established model species for plant molecular
biology, genetics, epigenetics, and genomics. However, the latest version of reference …
biology, genetics, epigenetics, and genomics. However, the latest version of reference …
SEdb 2.0: a comprehensive super-enhancer database of human and mouse
Y Wang, C Song, J Zhao, Y Zhang, X Zhao… - Nucleic Acids …, 2023 - academic.oup.com
Super-enhancers (SEs) are cell-specific DNA cis-regulatory elements that can supervise the
transcriptional regulation processes of downstream genes. SEdb 2.0 (http://www. licpathway …
transcriptional regulation processes of downstream genes. SEdb 2.0 (http://www. licpathway …
Genome Warehouse: a public repository housing genome-scale data
Abstract The Genome Warehouse (GWH) is a public repository housing genome assembly
data for a wide range of species and delivering a series of web services for genome data …
data for a wide range of species and delivering a series of web services for genome data …
Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes
Viruses significantly influence local and global biogeochemical cycles and help bacteria to
survive in different environments by encoding various auxiliary metabolic genes (AMGs) …
survive in different environments by encoding various auxiliary metabolic genes (AMGs) …
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …
87 papers reporting on new databases and 85 updates from resources previously published …