A review of long‐branch attraction

J Bergsten - Cladistics, 2005 - Wiley Online Library
The history of long‐branch attraction, and in particular methods suggested to detect and
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …

Evolution in caves: Darwin's 'wrecks of ancient life'in the molecular era

C Juan, MT Guzik, D Jaume, SJB Cooper - Molecular Ecology, 2010 - Wiley Online Library
Cave animals have historically attracted the attention of evolutionary biologists because of
their bizarre 'regressive'characters and convergent evolution. However, understanding of …

An extreme case of plant–insect codiversification: figs and fig-pollinating wasps

A Cruaud, N Rønsted, B Chantarasuwan… - Systematic …, 2012 - academic.oup.com
It is thought that speciation in phytophagous insects is often due to colonization of novel host
plants, because radiations of plant and insect lineages are typically asynchronous. Recent …

Phylogenomic interrogation of Arachnida reveals systemic conflicts in phylogenetic signal

PP Sharma, ST Kaluziak… - Molecular biology …, 2014 - academic.oup.com
Chelicerata represents one of the oldest groups of arthropods, with a fossil record extending
to the Cambrian, and is sister group to the remaining extant arthropods, the mandibulates …

A phylogenetic analysis of the major groups of catfishes (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences

JP Sullivan, JG Lundberg, M Hardman - Molecular phylogenetics and …, 2006 - Elsevier
Higher-level relationships among catfishes were investigated by parsimony, maximum
likelihood and Bayesian analyses of two nuclear genes across 110 catfish species …

[HTML][HTML] Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

DA Pollard, VN Iyer, AM Moses, MB Eisen - PLoS genetics, 2006 - journals.plos.org
The phylogenetic relationship of the now fully sequenced species Drosophila erecta and D.
yakuba with respect to the D. melanogaster species complex has been a subject of …

Novel approaches for phylogenetic inference from morphological data and total-evidence dating in squamate reptiles (lizards, snakes, and amphisbaenians)

RA Pyron - Systematic Biology, 2017 - academic.oup.com
Here, I combine previously underutilized models and priors to perform more biologically
realistic phylogenetic inference from morphological data, with an example from squamate …

Rapid diversification and dispersal during periods of global warming by plethodontid salamanders

DR Vieites, MS Min, DB Wake - Proceedings of the …, 2007 - National Acad Sciences
A phylogeny and timescale derived from analyses of multilocus nuclear DNA sequences for
Holarctic genera of plethodontid salamanders reveal them to be an old radiation whose …

Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution

A Hassanin - Molecular phylogenetics and evolution, 2006 - Elsevier
In this study, mitochondrial sequences were used to investigate the relationships among the
major lineages of Arthropoda. The data matrix used for the analyses includes 84 taxa and …

Pushing short DNA fragments to the limit: phylogenetic relationships of 'hydrobioid'gastropods (Caenogastropoda: Rissooidea)

T Wilke, M Haase, R Hershler, HP Liu, B Misof… - Molecular phylogenetics …, 2013 - Elsevier
Although phylogenetic studies are increasingly utilizing multi-locus datasets, a review of
GenBank data for the Gastropoda indicates a strong bias towards a few short gene …