CRISPR-Based Methods for Caenorhabditis elegans Genome Engineering

DJ Dickinson, B Goldstein - Genetics, 2016 - academic.oup.com
The advent of genome editing techniques based on the clustered regularly interspersed
short palindromic repeats (CRISPR)–Cas9 system has revolutionized research in the …

A comprehensive survey of C. elegans argonaute proteins reveals organism-wide gene regulatory networks and functions

U Seroussi, A Lugowski, L Wadi, RX Lao, AR Willis… - Elife, 2023 - elifesciences.org
Argonaute (AGO) proteins associate with small RNAs to direct their effector function on
complementary transcripts. The nematode Caenorhabditis elegans contains an expanded …

The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans

L Zhang, JD Ward, Z Cheng, AF Dernburg - Development, 2015 - journals.biologists.com
Experimental manipulation of protein abundance in living cells or organisms is an essential
strategy for investigation of biological regulatory mechanisms. Whereas powerful techniques …

High Efficiency, Homology-Directed Genome Editing in Caenorhabditis elegans Using CRISPR-Cas9 Ribonucleoprotein Complexes

A Paix, A Folkmann, D Rasoloson, G Seydoux - Genetics, 2015 - academic.oup.com
Homology-directed repair (HDR) of breaks induced by the RNA-programmed nuclease
Cas9 has become a popular method for genome editing in several organisms. Most HDR …

[HTML][HTML] Unique homeobox codes delineate all the neuron classes of C. elegans

MB Reilly, C Cros, E Varol, E Yemini, O Hobert - Nature, 2020 - nature.com
It is not known at present whether neuronal cell-type diversity—defined by cell-type-specific
anatomical, biophysical, functional and molecular signatures—can be reduced to relatively …

An expanded auxin-inducible degron toolkit for Caenorhabditis elegans

GE Ashley, T Duong, MT Levenson, MAQ Martinez… - Genetics, 2021 - academic.oup.com
The auxin-inducible degron (AID) system has emerged as a powerful tool to conditionally
deplete proteins in a range of organisms and cell types. Here, we describe a toolkit to …

[HTML][HTML] Assembly of synaptic active zones requires phase separation of scaffold molecules

NA McDonald, RD Fetter, K Shen - Nature, 2020 - nature.com
The formation of synapses during neuronal development is essential for establishing neural
circuits and a nervous system. Every presynapse builds a core 'active zone'structure, where …

The Caenorhabditis elegans Transgenic Toolbox

J Nance, C Frøkjær-Jensen - Genetics, 2019 - academic.oup.com
The power of any genetic model organism is derived, in part, from the ease with which gene
expression can be manipulated. The short generation time and invariant developmental …

KIF1A/UNC-104 transports ATG-9 to regulate neurodevelopment and autophagy at synapses

AKH Stavoe, SE Hill, DH Hall, DA Colón-Ramos - Developmental cell, 2016 - cell.com
Autophagy is a cellular degradation process important for neuronal development and
survival. Neurons are highly polarized cells in which autophagosome biogenesis is spatially …

[HTML][HTML] poly (UG)-tailed RNAs in genome protection and epigenetic inheritance

A Shukla, J Yan, DJ Pagano, AE Dodson, Y Fei… - Nature, 2020 - nature.com
Mobile genetic elements threaten genome integrity in all organisms. RDE-3 (also known as
MUT-2) is a ribonucleotidyltransferase that is required for transposon silencing and RNA …