Universal QM/MM approaches for general nanoscale applications

KS Csizi, M Reiher - Wiley Interdisciplinary Reviews …, 2023 - Wiley Online Library
Quantum mechanics/molecular mechanics (QM/MM) hybrid models allow one to address
chemical phenomena in complex molecular environments. Whereas this modeling approach …

End-to-end differentiable construction of molecular mechanics force fields

Y Wang, J Fass, B Kaminow, JE Herr, D Rufa… - Chemical …, 2022 - pubs.rsc.org
Molecular mechanics (MM) potentials have long been a workhorse of computational
chemistry. Leveraging accuracy and speed, these functional forms find use in a wide variety …

Recent advances in density functional theory approach for optoelectronics properties of graphene

AL Olatomiwa, T Adam, CO Edet, AA Adewale, A Chik… - Heliyon, 2023 - cell.com
Graphene has received tremendous attention among diverse 2D materials because of its
remarkable properties. Its emergence over the last two decades gave a new and distinct …

Uncertainty quantification in molecular simulations with dropout neural network potentials

M Wen, EB Tadmor - npj computational materials, 2020 - nature.com
Abstract Machine learning interatomic potentials (IPs) can provide accuracy close to that of
first-principles methods, such as density functional theory (DFT), at a fraction of the …

Configuration-sampling-based surrogate models for rapid parameterization of non-bonded interactions

RA Messerly, SM Razavi, MR Shirts - Journal of Chemical Theory …, 2018 - ACS Publications
In this study, we present an approach for rapid force field parameterization and uncertainty
quantification of the non-bonded interaction parameters for classical force fields. The …

Hybrid machine-learning-assisted quantification of the compound internal and external uncertainties of graphene: towards inclusive analysis and design

KK Gupta, T Mukhopadhyay, L Roy, S Dey - Materials Advances, 2022 - pubs.rsc.org
Molecular dynamics (MD) simulations have emerged to be a vital tool for the analysis of
nanoscale materials like graphene. However, the reliability of the results derived from MD …

[HTML][HTML] Bayesian, frequentist, and information geometric approaches to parametric uncertainty quantification of classical empirical interatomic potentials

Y Kurniawan, CL Petrie, KJ Williams… - The Journal of …, 2022 - pubs.aip.org
In this paper, we consider the problem of quantifying parametric uncertainty in classical
empirical interatomic potentials (IPs) using both Bayesian (Markov Chain Monte Carlo) and …

Towards quantitative prediction of ignition-delay-time sensitivity on fuel-to-air equivalence ratio

RA Messerly, MJ Rahimi, PCS John, JH Luecke… - Combustion and …, 2020 - Elsevier
Several compression-ignition and low-temperature combustion strategies require a fuel
where the ignition-delay-time (IDT) is highly sensitive to the fuel-to-air equivalence ratio (ϕ) …

End-to-end differentiable molecular mechanics force field construction

Y Wang, J Fass, B Kaminow, JE Herr, D Rufa… - arXiv preprint arXiv …, 2020 - arxiv.org
Molecular mechanics (MM) potentials have long been a workhorse of computational
chemistry. Leveraging accuracy and speed, these functional forms find use in a wide variety …

Uncertainty quantification in materials modeling

Y Wang, DL McDowell - Uncertainty Quantification in Multiscale Materials …, 2020 - Elsevier
Abstract Integrated Computational Materials Engineering (ICME) has been widely
articulated and pursued over the past decade. Recognition of the need to ensure reliability …