The expanding vistas of spatial transcriptomics
The formation and maintenance of tissue integrity requires complex, coordinated activities
by thousands of genes and their encoded products. Until recently, transcript levels could …
by thousands of genes and their encoded products. Until recently, transcript levels could …
Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics
Single-cell RNA sequencing (scRNA-seq) identifies cell subpopulations within tissue but
does not capture their spatial distribution nor reveal local networks of intercellular …
does not capture their spatial distribution nor reveal local networks of intercellular …
[HTML][HTML] Mapping transcriptomic vector fields of single cells
Summary Single-cell (sc) RNA-seq, together with RNA velocity and metabolic labeling,
reveals cellular states and transitions at unprecedented resolution. Fully exploiting these …
reveals cellular states and transitions at unprecedented resolution. Fully exploiting these …
Spatiotemporal omics for biology and medicine
The completion of the Human Genome Project has provided a foundational blueprint for
understanding human life. Nonetheless, understanding the intricate mechanisms through …
understanding human life. Nonetheless, understanding the intricate mechanisms through …
[HTML][HTML] Machine learning for perturbational single-cell omics
Cell biology is fundamentally limited in its ability to collect complete data on cellular
phenotypes and the wide range of responses to perturbation. Areas such as computer vision …
phenotypes and the wide range of responses to perturbation. Areas such as computer vision …
Modular, programmable RNA sensing using ADAR editing in living cells
With the increasing availability of single-cell transcriptomes, RNA signatures offer a
promising basis for targeting living cells. Molecular RNA sensors would enable the study of …
promising basis for targeting living cells. Molecular RNA sensors would enable the study of …
The role of osteopontin in microglia biology: current concepts and future perspectives
The innate immune landscape of the central nervous system (CNS), including the brain and
the retina, consists of different myeloid cell populations with distinct tasks to fulfill. Whereas …
the retina, consists of different myeloid cell populations with distinct tasks to fulfill. Whereas …
Spatial transcriptomics: recent developments and insights in respiratory research
WJ Wang, LX Chu, LY He, MJ Zhang, KT Dang… - Military Medical …, 2023 - Springer
The respiratory system's complex cellular heterogeneity presents unique challenges to
researchers in this field. Although bulk RNA sequencing and single-cell RNA sequencing …
researchers in this field. Although bulk RNA sequencing and single-cell RNA sequencing …
Microfluidics-based single cell analysis: from transcriptomics to spatiotemporal multi-omics
J Cao, X Chen, S Huang, W Shi, Q Fan, Y Gong… - TrAC Trends in …, 2023 - Elsevier
Uncover cell composition, cellular spatial distribution, and cell-to-cell interactions in tissues
are significant for the understanding of physiological and pathological processes. Over the …
are significant for the understanding of physiological and pathological processes. Over the …
[HTML][HTML] Molecular recording: transcriptional data collection into the genome
SK Lear, SL Shipman - Current opinion in biotechnology, 2023 - Elsevier
Highlights•Molecular recorders capture transcriptional activity within the genome of
cells.•Transcriptional activity is recorded by linking a signal of interest to a DNA …
cells.•Transcriptional activity is recorded by linking a signal of interest to a DNA …