Architectural and functional commonalities between enhancers and promoters
TK Kim, R Shiekhattar - Cell, 2015 - cell.com
With the explosion of genome-wide studies of regulated transcription, it has become clear
that traditional definitions of enhancers and promoters need to be revisited. These control …
that traditional definitions of enhancers and promoters need to be revisited. These control …
CREB: a stimulus-induced transcription factor activated by a diverse array of extracellular signals
AJ Shaywitz, ME Greenberg - Annual review of biochemistry, 1999 - annualreviews.org
▪ Abstract Extracellular stimuli elicit changes in gene expression in target cells by activating
intracellular protein kinase cascades that phosphorylate transcription factors within the …
intracellular protein kinase cascades that phosphorylate transcription factors within the …
A large fraction of extragenic RNA pol II transcription sites overlap enhancers
F De Santa, I Barozzi, F Mietton, S Ghisletti… - PLoS …, 2010 - journals.plos.org
Mammalian genomes are pervasively transcribed outside mapped protein-coding genes.
One class of extragenic transcription products is represented by long non-coding RNAs …
One class of extragenic transcription products is represented by long non-coding RNAs …
Combinatorial patterns of histone acetylations and methylations in the human genome
Histones are characterized by numerous posttranslational modifications that influence gene
transcription,. However, because of the lack of global distribution data in higher eukaryotic …
transcription,. However, because of the lack of global distribution data in higher eukaryotic …
The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription
O Mikhaylichenko, V Bondarenko… - Genes & …, 2018 - genesdev.cshlp.org
Gene expression is regulated by promoters, which initiate transcription, and enhancers,
which control their temporal and spatial activity. However, the discovery that mammalian …
which control their temporal and spatial activity. However, the discovery that mammalian …
[HTML][HTML] Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
Histone acetyltransferases (HATs) and deacetylases (HDACs) function antagonistically to
control histone acetylation. As acetylation is a histone mark for active transcription, HATs …
control histone acetylation. As acetylation is a histone mark for active transcription, HATs …
Acetylation of histones and transcription-related factors
DE Sterner, SL Berger - Microbiology and molecular biology …, 2000 - Am Soc Microbiol
The state of chromatin (the packaging of DNA in eukaryotes) has long been recognized to
have major effects on levels of gene expression, and numerous chromatin-altering …
have major effects on levels of gene expression, and numerous chromatin-altering …
[HTML][HTML] Histone acetylation: a switch between repressive and permissive chromatin
A Eberharter, PB Becker - EMBO reports, 2002 - embopress.org
The organization of eukaryotic chromatin has a major impact on all nuclear processes
involving DNA substrates. Gene expression is affected by the positioning of individual …
involving DNA substrates. Gene expression is affected by the positioning of individual …
Thermal proximity coaggregation for system-wide profiling of protein complex dynamics in cells
Proteins differentially interact with each other across cellular states and conditions, but an
efficient proteome-wide strategy to monitor them is lacking. We report the application of …
efficient proteome-wide strategy to monitor them is lacking. We report the application of …
The general transcription machinery and general cofactors
MC Thomas, CM Chiang - Critical reviews in biochemistry and …, 2006 - Taylor & Francis
In eukaryotes, the core promoter serves as a platform for the assembly of transcription
preinitiation complex (PIC) that includes TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIH, and RNA …
preinitiation complex (PIC) that includes TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIH, and RNA …