Architectural and functional commonalities between enhancers and promoters

TK Kim, R Shiekhattar - Cell, 2015 - cell.com
With the explosion of genome-wide studies of regulated transcription, it has become clear
that traditional definitions of enhancers and promoters need to be revisited. These control …

CREB: a stimulus-induced transcription factor activated by a diverse array of extracellular signals

AJ Shaywitz, ME Greenberg - Annual review of biochemistry, 1999 - annualreviews.org
▪ Abstract Extracellular stimuli elicit changes in gene expression in target cells by activating
intracellular protein kinase cascades that phosphorylate transcription factors within the …

A large fraction of extragenic RNA pol II transcription sites overlap enhancers

F De Santa, I Barozzi, F Mietton, S Ghisletti… - PLoS …, 2010 - journals.plos.org
Mammalian genomes are pervasively transcribed outside mapped protein-coding genes.
One class of extragenic transcription products is represented by long non-coding RNAs …

Combinatorial patterns of histone acetylations and methylations in the human genome

Z Wang, C Zang, JA Rosenfeld, DE Schones, A Barski… - Nature …, 2008 - nature.com
Histones are characterized by numerous posttranslational modifications that influence gene
transcription,. However, because of the lack of global distribution data in higher eukaryotic …

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

O Mikhaylichenko, V Bondarenko… - Genes & …, 2018 - genesdev.cshlp.org
Gene expression is regulated by promoters, which initiate transcription, and enhancers,
which control their temporal and spatial activity. However, the discovery that mammalian …

[HTML][HTML] Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

Z Wang, C Zang, K Cui, DE Schones, A Barski, W Peng… - Cell, 2009 - cell.com
Histone acetyltransferases (HATs) and deacetylases (HDACs) function antagonistically to
control histone acetylation. As acetylation is a histone mark for active transcription, HATs …

Acetylation of histones and transcription-related factors

DE Sterner, SL Berger - Microbiology and molecular biology …, 2000 - Am Soc Microbiol
The state of chromatin (the packaging of DNA in eukaryotes) has long been recognized to
have major effects on levels of gene expression, and numerous chromatin-altering …

[HTML][HTML] Histone acetylation: a switch between repressive and permissive chromatin

A Eberharter, PB Becker - EMBO reports, 2002 - embopress.org
The organization of eukaryotic chromatin has a major impact on all nuclear processes
involving DNA substrates. Gene expression is affected by the positioning of individual …

Thermal proximity coaggregation for system-wide profiling of protein complex dynamics in cells

CSH Tan, KD Go, X Bisteau, L Dai, CH Yong, N Prabhu… - Science, 2018 - science.org
Proteins differentially interact with each other across cellular states and conditions, but an
efficient proteome-wide strategy to monitor them is lacking. We report the application of …

The general transcription machinery and general cofactors

MC Thomas, CM Chiang - Critical reviews in biochemistry and …, 2006 - Taylor & Francis
In eukaryotes, the core promoter serves as a platform for the assembly of transcription
preinitiation complex (PIC) that includes TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIH, and RNA …