Large-scale neural recordings call for new insights to link brain and behavior

AE Urai, B Doiron, AM Leifer, AK Churchland - Nature neuroscience, 2022 - nature.com
Neuroscientists today can measure activity from more neurons than ever before, and are
facing the challenge of connecting these brain-wide neural recordings to computation and …

A guide to light-sheet fluorescence microscopy for multiscale imaging

RM Power, J Huisken - Nature methods, 2017 - nature.com
The impact of light-sheet fluorescence microscopy (LSFM) is visible in fields as diverse as
developmental and cell biology, anatomical science, biophysics and neuroscience …

[HTML][HTML] Real-time denoising enables high-sensitivity fluorescence time-lapse imaging beyond the shot-noise limit

X Li, Y Li, Y Zhou, J Wu, Z Zhao, J Fan, F Deng… - Nature …, 2023 - nature.com
A fundamental challenge in fluorescence microscopy is the photon shot noise arising from
the inevitable stochasticity of photon detection. Noise increases measurement uncertainty …

[HTML][HTML] NeuroPAL: a multicolor atlas for whole-brain neuronal identification in C. elegans

E Yemini, A Lin, A Nejatbakhsh, E Varol, R Sun… - Cell, 2021 - cell.com
Comprehensively resolving neuronal identities in whole-brain images is a major challenge.
We achieve this in C. elegans by engineering a multicolor transgene called NeuroPAL (a …

A survey on applications of deep learning in microscopy image analysis

Z Liu, L Jin, J Chen, Q Fang, S Ablameyko, Z Yin… - Computers in biology …, 2021 - Elsevier
Advanced microscopy enables us to acquire quantities of time-lapse images to visualize the
dynamic characteristics of tissues, cells or molecules. Microscopy images typically vary in …

From the neuron doctrine to neural networks

R Yuste - Nature reviews neuroscience, 2015 - nature.com
For over a century, the neuron doctrine—which states that the neuron is the structural and
functional unit of the nervous system—has provided a conceptual foundation for …

In vivo imaging of neural activity

W Yang, R Yuste - Nature methods, 2017 - nature.com
Since the introduction of calcium imaging to monitor neuronal activity with single-cell
resolution, optical imaging methods have revolutionized neuroscience by enabling …

[HTML][HTML] Global brain dynamics embed the motor command sequence of Caenorhabditis elegans

S Kato, HS Kaplan, T Schrödel, S Skora, TH Lindsay… - Cell, 2015 - cell.com
While isolated motor actions can be correlated with activities of neuronal networks, an
unresolved problem is how the brain assembles these activities into organized behaviors …

Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms

MB Bouchard, V Voleti, CS Mendes, C Lacefield… - Nature …, 2015 - nature.com
We report a three-dimensional microscopy technique—swept, confocally-aligned planar
excitation (SCAPE) microscopy—that allows volumetric imaging of living samples at …

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

R Prevedel, YG Yoon, M Hoffmann, N Pak… - Nature …, 2014 - nature.com
High-speed, large-scale three-dimensional (3D) imaging of neuronal activity poses a major
challenge in neuroscience. Here we demonstrate simultaneous functional imaging of …