Genomics and pathotypes of the many faces of Escherichia coli

J Geurtsen, M de Been, E Weerdenburg… - FEMS microbiology …, 2022 - academic.oup.com
Escherichia coli is the most researched microbial organism in the world. Its varied impact on
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …

Fighting antibiotic resistance in hospital-acquired infections: current state and emerging technologies in disease prevention, diagnostics and therapy

E Avershina, V Shapovalova, G Shipulin - Frontiers in microbiology, 2021 - frontiersin.org
Rising antibiotic resistance is a global threat that is projected to cause more deaths than all
cancers combined by 2050. In this review, we set to summarize the current state of antibiotic …

BacWGSTdb 2.0: a one-stop repository for bacterial whole-genome sequence typing and source tracking

Y Feng, S Zou, H Chen, Y Yu, Z Ruan - Nucleic Acids Research, 2021 - academic.oup.com
An increasing prevalence of hospital acquired infections and foodborne illnesses caused by
pathogenic and multidrug-resistant bacteria has stimulated a pressing need for benchtop …

Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective

JI Kim, F Maguire, KK Tsang, T Gouliouris… - Clinical microbiology …, 2022 - Am Soc Microbiol
Antimicrobial resistance (AMR) is a global health crisis that poses a great threat to modern
medicine. Effective prevention strategies are urgently required to slow the emergence and …

Artificial intelligence and machine learning assisted drug delivery for effective treatment of infectious diseases

S He, LG Leanse, Y Feng - Advanced drug delivery reviews, 2021 - Elsevier
In the era of antimicrobial resistance, the prevalence of multidrug-resistant microorganisms
that resist conventional antibiotic treatment has steadily increased. Thus, it is now …

Applications of machine learning to the problem of antimicrobial resistance: an emerging model for translational research

MN Anahtar, JH Yang, S Kanjilal - Journal of clinical microbiology, 2021 - Am Soc Microbiol
Antimicrobial resistance (AMR) remains one of the most challenging phenomena of modern
medicine. Machine learning (ML) is a subfield of artificial intelligence that focuses on the …

Antimicrobial resistance crisis: could artificial intelligence be the solution?

GY Liu, D Yu, MM Fan, X Zhang, ZY Jin, C Tang… - Military Medical …, 2024 - Springer
Antimicrobial resistance is a global public health threat, and the World Health Organization
(WHO) has announced a priority list of the most threatening pathogens against which novel …

Antimicrobial resistance and machine learning: past, present, and future

F Farhat, MT Athar, S Ahmad, DØ Madsen… - Frontiers in …, 2023 - frontiersin.org
Machine learning has become ubiquitous across all industries, including the relatively new
application of predicting antimicrobial resistance. As the first bibliometric review in this field …

[HTML][HTML] AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae

E Avershina, P Sharma, AM Taxt, H Singh… - Computational and …, 2021 - Elsevier
Antibiotic resistance poses a major threat to public health. More effective ways of the
antibiotic prescription are needed to delay the spread of antibiotic resistance. Employment of …

A Practical Approach for Predicting Antimicrobial Phenotype Resistance in Staphylococcus aureus Through Machine Learning Analysis of Genome Data

S Wang, C Zhao, Y Yin, F Chen, H Chen… - Frontiers in …, 2022 - frontiersin.org
With the reduction in sequencing price and acceleration of sequencing speed, it is
particularly important to directly link the genotype and phenotype of bacteria. Here, we firstly …