Size does matter: application-driven approaches for soil metagenomics

KS Kakirde, LC Parsley, MR Liles - Soil Biology and Biochemistry, 2010 - Elsevier
Metagenomic analyses can provide extensive information on the structure, composition, and
predicted gene functions of diverse environmental microbial assemblages. Each …

Biodegradation and biotransformation of explosives

EL Rylott, A Lorenz, NC Bruce - Current Opinion in Biotechnology, 2011 - Elsevier
Explosives now contaminate millions of hectares of land in the US alone, with global levels
of contamination difficult to fully assess. Understanding the biology behind the metabolism of …

Impact of long-term diesel contamination on soil microbial community structure

NB Sutton, F Maphosa, JA Morillo… - Applied and …, 2013 - Am Soc Microbiol
Microbial community composition and diversity at a diesel-contaminated railway site were
investigated by pyrosequencing of bacterial and archaeal 16S rRNA gene fragments to …

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

AA Navarrete, EE Kuramae… - FEMS microbiology …, 2013 - academic.oup.com
This study focused on the impact of land-use changes and agricultural management of
soybean in Amazon forest soils on the abundance and composition of the acidobacterial …

Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon

AA Navarrete, AM Venturini, KM Meyer… - Frontiers in …, 2015 - frontiersin.org
Members of the phylum Acidobacteria are among the most abundant soil bacteria on Earth,
but little is known about their response to environmental changes. We asked how the …

Wheat and rice growth stages and fertilization regimes alter soil bacterial community structure, but not diversity

J Wang, C Xue, Y Song, L Wang, Q Huang… - Frontiers in …, 2016 - frontiersin.org
Maintaining soil fertility and the microbial communities that determine fertility is critical to
sustainable agricultural strategies, and the use of different organic fertilizer (OF) regimes …

Novel isolates double the number of chemotrophic species and allow the first description of higher taxa in Acidobacteria subdivision 4

J Pascual, PK Wüst, A Geppert, BU Foesel… - Systematic and applied …, 2015 - Elsevier
Despite their high phylogenetic diversity and abundance in soils worldwide, Acidobacteria
represent an enigmatic bacterial phylum. Four novel Acidobacteria strains were isolated …

Bacterial diversity controls transformation of wastewater-derived organic contaminants in river-simulating flumes

M Posselt, J Mechelke, C Rutere, C Coll… - … science & technology, 2020 - ACS Publications
Hyporheic zones are the water-saturated flow-through subsurfaces of rivers which are
characterized by the simultaneous occurrence of multiple physical, biological, and chemical …

Microbial diversity, community composition and metabolic potential in hydrocarbon contaminated oily sludge: prospects for in situ bioremediation

R Das, SK Kazy - Environmental Science and Pollution Research, 2014 - Springer
Microbial community composition and metabolic potential have been explored in petroleum-
hydrocarbon-contaminated sludge of an oil storage facility. Culture-independent clone …

Early rhizosphere microbiome composition is related to the growth and Zn uptake of willows introduced to a former landfill

TH Bell, B Cloutier‐Hurteau, F Al‐Otaibi… - Environmental …, 2015 - Wiley Online Library
Although plants introduced for site restoration are pre‐selected for specific traits (eg trace
element bioaccumulation, rapid growth in poor soils), the in situ success of these plants …