[HTML][HTML] Chromatin domains: the unit of chromosome organization

JR Dixon, DU Gorkin, B Ren - Molecular cell, 2016 - cell.com
How eukaryotic chromosomes fold inside the nucleus is an age-old question that remains
unanswered today. Early biochemical and microscopic studies revealed the existence of …

Dynamic stem cell states: naive to primed pluripotency in rodents and humans

L Weinberger, M Ayyash, N Novershtern… - … reviews Molecular cell …, 2016 - nature.com
The molecular mechanisms and signalling pathways that regulate the in vitro preservation of
distinct pluripotent stem cell configurations, and their induction in somatic cells by direct …

Stem-cell-based embryo models for fundamental research and translation

J Fu, A Warmflash, MP Lutolf - Nature materials, 2021 - nature.com
Despite its importance, understanding the early phases of human development has been
limited by availability of human samples. The recent emergence of stem-cell-derived embryo …

[HTML][HTML] SOX17 is a critical specifier of human primordial germ cell fate

N Irie, L Weinberger, WWC Tang, T Kobayashi… - Cell, 2015 - cell.com
Specification of primordial germ cells (PGCs) marks the beginning of the totipotent state.
However, without a tractable experimental model, the mechanism of human PGC (hPGC) …

Specification and epigenetic programming of the human germ line

WWC Tang, T Kobayashi, N Irie, S Dietmann… - Nature Reviews …, 2016 - nature.com
Primordial germ cells (PGCs), the precursors of sperm and eggs, are established in
perigastrulation-stage embryos in mammals. Signals from extra-embryonic tissues induce a …

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

EJ Grow, RA Flynn, SL Chavez, NL Bayless… - Nature, 2015 - nature.com
Endogenous retroviruses (ERVs) are remnants of ancient retroviral infections, and comprise
nearly 8% of the human genome. The most recently acquired human ERV is HERVK (HML …

Derivation of novel human ground state naive pluripotent stem cells

O Gafni, L Weinberger, AAF Mansour, YS Manor… - Nature, 2013 - nature.com
Mouse embryonic stem (ES) cells are isolated from the inner cell mass of blastocysts, and
can be preserved in vitro in a naive inner-cell-mass-like configuration by providing …

[HTML][HTML] Microscopy-based high-content screening

M Boutros, F Heigwer, C Laufer - Cell, 2015 - cell.com
Image-based screening is used to measure a variety of phenotypes in cells and whole
organisms. Combined with perturbations such as RNA interference, small molecules, and …

[HTML][HTML] Optical pooled screens in human cells

D Feldman, A Singh, JL Schmid-Burgk, RJ Carlson… - Cell, 2019 - cell.com
Genetic screens are critical for the systematic identification of genes underlying cellular
phenotypes. Pooling gene perturbations greatly improves scalability but is not compatible …

[HTML][HTML] H3K4me3 breadth is linked to cell identity and transcriptional consistency

BA Benayoun, EA Pollina, D Ucar, S Mahmoudi… - Cell, 2014 - cell.com
Trimethylation of histone H3 at lysine 4 (H3K4me3) is a chromatin modification known to
mark the transcription start sites of active genes. Here, we show that H3K4me3 domains that …