Spatial proteomics: a powerful discovery tool for cell biology

E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …

Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Spatial centrosome proteome of human neural cells uncovers disease-relevant heterogeneity

AC O'Neill, F Uzbas, G Antognolli, F Merino… - Science, 2022 - science.org
The centrosome provides an intracellular anchor for the cytoskeleton, regulating cell
division, cell migration, and cilia formation. We used spatial proteomics to elucidate protein …

Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics

A Geladaki, N Kočevar Britovšek, LM Breckels… - Nature …, 2019 - nature.com
The study of protein localisation has greatly benefited from high-throughput methods
utilising cellular fractionation and proteomic profiling. Hyperplexed Localisation of Organelle …

Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution

A Martinez-Val, DB Bekker-Jensen… - Nature …, 2021 - nature.com
Dynamic change in subcellular localization of signaling proteins is a general concept that
eukaryotic cells evolved for eliciting a coordinated response to stimuli. Mass spectrometry …

Computational methods for understanding mass spectrometry–based shotgun proteomics data

P Sinitcyn, JD Rudolph, J Cox - Annual Review of Biomedical …, 2018 - annualreviews.org
Computational proteomics is the data science concerned with the identification and
quantification of proteins from high-throughput data and the biological interpretation of their …

Application of machine learning in spatial proteomics

M Mou, Z Pan, M Lu, H Sun, Y Wang… - Journal of Chemical …, 2022 - ACS Publications
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …

Role of the AP-5 adaptor protein complex in late endosome-to-Golgi retrieval

J Hirst, DN Itzhak, R Antrobus, GHH Borner… - PLoS …, 2018 - journals.plos.org
The AP-5 adaptor protein complex is presumed to function in membrane traffic, but so far
nothing is known about its pathway or its cargo. We have used CRISPR-Cas9 to knock out …

AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A

AK Davies, DN Itzhak, JR Edgar, TL Archuleta… - Nature …, 2018 - nature.com
Abstract Adaptor protein 4 (AP-4) is an ancient membrane trafficking complex, whose
function has largely remained elusive. In humans, AP-4 deficiency causes a severe …

Adaptor protein complexes and disease at a glance

A Sanger, J Hirst, AK Davies… - Journal of Cell …, 2019 - journals.biologists.com
Adaptor protein (AP) complexes are heterotetramers that select cargo for inclusion into
transport vesicles. Five AP complexes (AP-1 to AP-5) have been described, each with a …