Spatial proteomics: a powerful discovery tool for cell biology
E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
Spatial centrosome proteome of human neural cells uncovers disease-relevant heterogeneity
The centrosome provides an intracellular anchor for the cytoskeleton, regulating cell
division, cell migration, and cilia formation. We used spatial proteomics to elucidate protein …
division, cell migration, and cilia formation. We used spatial proteomics to elucidate protein …
Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics
A Geladaki, N Kočevar Britovšek, LM Breckels… - Nature …, 2019 - nature.com
The study of protein localisation has greatly benefited from high-throughput methods
utilising cellular fractionation and proteomic profiling. Hyperplexed Localisation of Organelle …
utilising cellular fractionation and proteomic profiling. Hyperplexed Localisation of Organelle …
Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution
A Martinez-Val, DB Bekker-Jensen… - Nature …, 2021 - nature.com
Dynamic change in subcellular localization of signaling proteins is a general concept that
eukaryotic cells evolved for eliciting a coordinated response to stimuli. Mass spectrometry …
eukaryotic cells evolved for eliciting a coordinated response to stimuli. Mass spectrometry …
Computational methods for understanding mass spectrometry–based shotgun proteomics data
Computational proteomics is the data science concerned with the identification and
quantification of proteins from high-throughput data and the biological interpretation of their …
quantification of proteins from high-throughput data and the biological interpretation of their …
Application of machine learning in spatial proteomics
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
Role of the AP-5 adaptor protein complex in late endosome-to-Golgi retrieval
The AP-5 adaptor protein complex is presumed to function in membrane traffic, but so far
nothing is known about its pathway or its cargo. We have used CRISPR-Cas9 to knock out …
nothing is known about its pathway or its cargo. We have used CRISPR-Cas9 to knock out …
AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A
Abstract Adaptor protein 4 (AP-4) is an ancient membrane trafficking complex, whose
function has largely remained elusive. In humans, AP-4 deficiency causes a severe …
function has largely remained elusive. In humans, AP-4 deficiency causes a severe …
Adaptor protein complexes and disease at a glance
Adaptor protein (AP) complexes are heterotetramers that select cargo for inclusion into
transport vesicles. Five AP complexes (AP-1 to AP-5) have been described, each with a …
transport vesicles. Five AP complexes (AP-1 to AP-5) have been described, each with a …