A critical analysis of codon optimization in human therapeutics
VP Mauro, SA Chappell - Trends in molecular medicine, 2014 - cell.com
Codon optimization describes gene engineering approaches that use synonymous codon
changes to increase protein production. Applications for codon optimization include …
changes to increase protein production. Applications for codon optimization include …
Engineering biological systems using automated biofoundries
Engineered biological systems such as genetic circuits and microbial cell factories have
promised to solve many challenges in the modern society. However, the artisanal processes …
promised to solve many challenges in the modern society. However, the artisanal processes …
Design of a synthetic yeast genome
We describe complete design of a synthetic eukaryotic genome, Sc2. 0, a highly modified
Saccharomyces cerevisiae genome reduced in size by nearly 8%, with 1.1 megabases of …
Saccharomyces cerevisiae genome reduced in size by nearly 8%, with 1.1 megabases of …
Repurposing CRISPR-Cas12b for mammalian genome engineering
F Teng, T Cui, G Feng, L Guo, K Xu, Q Gao, T Li, J Li… - Cell discovery, 2018 - nature.com
The prokaryotic CRISPR-Cas adaptive immune systems provide valuable resources to
develop genome editing tools, such as CRISPR-Cas9 and CRISPR-Cas12a/Cpf1. Recently …
develop genome editing tools, such as CRISPR-Cas9 and CRISPR-Cas12a/Cpf1. Recently …
Codon optimization with deep learning to enhance protein expression
H Fu, Y Liang, X Zhong, ZL Pan, L Huang, HL Zhang… - Scientific reports, 2020 - nature.com
Heterologous expression is the main approach for recombinant protein production ingenetic
synthesis, for which codon optimization is necessary. The existing optimization methods are …
synthesis, for which codon optimization is necessary. The existing optimization methods are …
Total synthesis of a functional designer eukaryotic chromosome
Rapid advances in DNA synthesis techniques have made it possible to engineer viruses,
biochemical pathways and assemble bacterial genomes. Here, we report the synthesis of a …
biochemical pathways and assemble bacterial genomes. Here, we report the synthesis of a …
Synthetic chromosome arms function in yeast and generate phenotypic diversity by design
JS Dymond, SM Richardson, CE Coombes, T Babatz… - Nature, 2011 - nature.com
Recent advances in DNA synthesis technology have enabled the construction of novel
genetic pathways and genomic elements, furthering our understanding of system-level …
genetic pathways and genomic elements, furthering our understanding of system-level …
Engineering BioBrick vectors from BioBrick parts
RP Shetty, D Endy, TF Knight - Journal of biological engineering, 2008 - Springer
Background The underlying goal of synthetic biology is to make the process of engineering
biological systems easier. Recent work has focused on defining and developing standard …
biological systems easier. Recent work has focused on defining and developing standard …
GFP Reconstitution Across Synaptic Partners (GRASP) defines cell contacts and synapses in living nervous systems
EH Feinberg, MK VanHoven, A Bendesky, G Wang… - Neuron, 2008 - cell.com
The identification of synaptic partners is challenging in dense nerve bundles, where many
processes occupy regions beneath the resolution of conventional light microscopy. To …
processes occupy regions beneath the resolution of conventional light microscopy. To …
OPTIMIZER: a web server for optimizing the codon usage of DNA sequences
P Puigbo, E Guzmán, A Romeu… - Nucleic acids …, 2007 - academic.oup.com
OPTIMIZER is an on-line application that optimizes the codon usage of a gene to increase
its expression level. Three methods of optimization are available: the 'one amino acid–one …
its expression level. Three methods of optimization are available: the 'one amino acid–one …