Using Computational Chemistry to Reveal Nature's Blueprints for Single-Site Catalysis of C–H Activation
The challenge of activating inert C–H bonds motivates a study of catalysts that draws from
what can be accomplished by natural enzymes and translates these advantageous features …
what can be accomplished by natural enzymes and translates these advantageous features …
Structural Insights into a Side Chain Cross-Linking Biarylitide P450 from RiPP Biosynthesis
Peptide side chain cross-linking is an important feature of many natural products, with an
increasing number of examples catalyzed by cytochrome P450s being reported from …
increasing number of examples catalyzed by cytochrome P450s being reported from …
Structural differences in 3C-like protease (Mpro) from SARS-CoV and SARS-CoV-2: molecular insights revealed by molecular dynamics simulations
Novel coronavirus SARS-CoV-2 has infected millions of people with thousands of mortalities
globally. The main protease (Mpro) is vital in processing replicase polyproteins. Both the …
globally. The main protease (Mpro) is vital in processing replicase polyproteins. Both the …
When are two hydrogen bonds better than one? Accurate first-principles models explain the balance of hydrogen bond donors and acceptors found in proteins
Hydrogen bonds (HBs) play an essential role in the structure and catalytic action of
enzymes, but a complete understanding of HBs in proteins challenges the resolution of …
enzymes, but a complete understanding of HBs in proteins challenges the resolution of …
Structural basis for the calmodulin-mediated activation of eukaryotic elongation factor 2 kinase
A Piserchio, EA Isiorho, K Long, AL Bohanon… - Science …, 2022 - science.org
Translation is a tightly regulated process that ensures optimal protein quality and enables
adaptation to energy/nutrient availability. The α-kinase eukaryotic elongation factor 2 kinase …
adaptation to energy/nutrient availability. The α-kinase eukaryotic elongation factor 2 kinase …
Evaluating unexpectedly short non-covalent distances in x-ray crystal structures of proteins with electronic structure analysis
We investigate unexpectedly short non-covalent distances (< 85% of the sum of van der
Waals radii) in X-ray crystal structures of proteins. We curate over 11 000 high-quality …
Waals radii) in X-ray crystal structures of proteins. We curate over 11 000 high-quality …
Molecular property analysis of the interacting state of L-Threonine and Metformin: An experimental and computational approach
B Borah, TG Devi - Journal of Molecular Structure, 2020 - Elsevier
The current work is undertaken to elucidate the interaction between L-Threonine and
Metformin (a type2 diabetes drug) using the theoretical method as well as the experimental …
Metformin (a type2 diabetes drug) using the theoretical method as well as the experimental …
Histidine in Proteins: pH-Dependent Interplay between π–π, Cation–π, and CH–π Interactions
R Calinsky, Y Levy - Journal of Chemical Theory and …, 2024 - ACS Publications
Histidine (His) stands out as the most versatile natural amino acid due to its side chain's
facile propensity to protonate at physiological pH, leading to a transition from aromatic to …
facile propensity to protonate at physiological pH, leading to a transition from aromatic to …
Electrochemical SEIRAS Analysis of Imidazole-Ring-Functionalized Self-Assembled Monolayers
V Pudžaitis, M Talaikis, R Sadzevičienė… - Materials, 2022 - mdpi.com
An essential amino acid, histidine, has a vital role in the secondary structure and catalytic
activity of proteins because of the diverse interactions its side chain imidazole (Im) ring can …
activity of proteins because of the diverse interactions its side chain imidazole (Im) ring can …
Quantifying the Long‐Range Coupling of Electronic Properties in Proteins with ab initio Molecular Dynamics**
The delicate interplay of covalent and non‐covalent interactions in proteins is inherently
quantum mechanical and highly dynamic in nature. To directly interrogate the evolving …
quantum mechanical and highly dynamic in nature. To directly interrogate the evolving …