[HTML][HTML] Molecular insights into the adaptive evolution of SARS-CoV-2 spike protein

Z Yao, L Zhang, Y Duan, X Tang, J Lu - Journal of Infection, 2024 - Elsevier
The COVID-19 pandemic, caused by the severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2), has substantially damaged the global economy and human health. The …

Post-vaccination neutralization responses to Omicron sub-variants

H Jacobsen, M Katzmarzyk, MM Higdon, VC Jiménez… - Vaccines, 2022 - mdpi.com
Background: The emergence of the Omicron variant (B. 1.1. 529), which correlated with
dramatic losses in cross-neutralization capacity of post-vaccination sera, raised concerns …

Adaptive evolution of the spike protein in coronaviruses

X Tang, Z Qian, X Lu, J Lu - Molecular Biology and Evolution, 2023 - academic.oup.com
Coronaviruses are single-stranded, positive-sense RNA viruses that can infect many
mammal and avian species. The Spike (S) protein of coronaviruses binds to a receptor on …

Coordinated evolution at amino acid sites of sars-cov-2 spike

AD Neverov, G Fedonin, A Popova, D Bykova… - Elife, 2023 - elifesciences.org
SARS-CoV-2 has adapted in a stepwise manner, with multiple beneficial mutations
accumulating in a rapid succession at origins of VOCs, and the reasons for this are unclear …

The increased amyloidogenicity of spike RBD and pH-dependent binding to ACE2 may contribute to the transmissibility and pathogenic properties of SARS-CoV-2 …

AY Aksenova, IV Likhachev, SY Grishin… - International Journal of …, 2022 - mdpi.com
SARS-CoV-2 is a rapidly evolving pathogen that has caused a global pandemic
characterized by several consecutive waves. Based on epidemiological and NGS data …

Ghosts of the past: Elemental composition, biosynthesis reactions and thermodynamic properties of Zeta P. 2, Eta B. 1.525, Theta P. 3, Kappa B. 1.617. 1, Iota B. 1.526 …

M Popovic, MP Pavlović, M Pavlović - Microbial Risk Analysis, 2023 - Elsevier
From the perspectives of molecular biology, genetics and biothermodynamics, SARS-CoV-2
is the among the best characterized viruses. Research on SARS-CoV-2 has shed a new …

Intra-vs. interhost evolution of SARS-CoV-2 driven by uncorrelated selection—the evolution thwarted

M Hou, J Shi, Z Gong, H Wen, Y Lan… - Molecular Biology …, 2023 - academic.oup.com
In viral evolution, a new mutation has to proliferate within the host (Stage I) in order to be
transmitted and then compete in the host population (Stage II). We now analyze the intrahost …

Optimization and deoptimization of codons in SARS‐CoV‐2 and related implications for vaccine development

X Wu, K Shan, F Zan, X Tang, Z Qian, J Lu - Advanced Science, 2023 - Wiley Online Library
The spread of coronavirus disease 2019 (COVID‐19), caused by severe respiratory
syndrome coronavirus 2 (SARS‐CoV‐2), has progressed into a global pandemic. To date …

Homo-harringtonine, highly effective against coronaviruses, is safe in treating COVID-19 by nebulization

H Ma, H Wen, Y Qin, S Wu, G Zhang, CI Wu… - Science China Life …, 2022 - Springer
Coronaviruses have increasingly become the causal agent of epidemics in humans as well
as in domesticated animals (Perlman and McIntosh, 2020; Wu et al., 2021). Since the …

Advances on the origin and evolution of biodiversity

C Xue, B Li, T Lei, H Shan, H Kong - Biodiversity Science, 2022 - biodiversity-science.net
Aims: The origin and evolution of biodiversity is one of the most important scientific
questions in the field of life sciences. The accumulation of multi-omics data and the …