Dual RNA-seq of pathogen and host
AJ Westermann, SA Gorski, J Vogel - Nature Reviews Microbiology, 2012 - nature.com
A comprehensive understanding of host–pathogen interactions requires a knowledge of the
associated gene expression changes in both the pathogen and the host. Traditional, probe …
associated gene expression changes in both the pathogen and the host. Traditional, probe …
Omics studies of citrus, grape and rosaceae fruit trees
K Shiratake, M Suzuki - Breeding Science, 2016 - jstage.jst.go.jp
Recent advance of bioinformatics and analytical apparatuses such as next generation DNA
sequencer (NGS) and mass spectrometer (MS) has brought a big wave of comprehensive …
sequencer (NGS) and mass spectrometer (MS) has brought a big wave of comprehensive …
Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis
SK Pradhan, E Pandit, DK Nayak, L Behera… - BMC plant biology, 2019 - Springer
Background Rice plants show yellowing, stunting, withering, reduced tillering and utimately
low productivity in susceptible varieties under low temperature stress. Comparative …
low productivity in susceptible varieties under low temperature stress. Comparative …
RNA-seq Transcriptome Response of Flax (Linum usitatissimum L.) to the Pathogenic Fungus Fusarium oxysporum f. sp. lini
L Galindo-González, MK Deyholos - Frontiers in plant science, 2016 - frontiersin.org
Fusarium oxysporum f. sp. lini is a hemibiotrophic fungus that causes wilt in flax. Along with
rust, fusarium wilt has become an important factor in flax production worldwide. Resistant …
rust, fusarium wilt has become an important factor in flax production worldwide. Resistant …
Deep RNA-Seq uncovers the peach transcriptome landscape
L Wang, S Zhao, C Gu, Y Zhou, H Zhou, J Ma… - Plant molecular …, 2013 - Springer
Peach (Prunus persica) is one of the most important of deciduous fruit trees worldwide. To
facilitate isolation of genes controlling important horticultural traits of peach, transcriptome …
facilitate isolation of genes controlling important horticultural traits of peach, transcriptome …
High-throughput sequencing reveals differential expression of miRNAs in tomato inoculated with Phytophthora infestans
Y Luan, J Cui, J Zhai, J Li, L Han, J Meng - Planta, 2015 - Springer
Main conclusion The characterization and compare expression profiling of the miRNA
transcriptome lay a solid foundation for unraveling the complex miRNA-mediated regulatory …
transcriptome lay a solid foundation for unraveling the complex miRNA-mediated regulatory …
[HTML][HTML] High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing
Peach (Prunus persica) is one of the most important temperate fruit trees in the world, based
on its production and cultivated area. Consumer acceptance is the principal objective of …
on its production and cultivated area. Consumer acceptance is the principal objective of …
Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA‐Seq
M Rubio, L Rodríguez‐Moreno… - Molecular plant …, 2015 - Wiley Online Library
Differences in gene expression were studied after P lum pox virus (PPV, sharka disease)
infection in peach GF305 leaves with and without sharka symptoms using RNA‐Seq. For …
infection in peach GF305 leaves with and without sharka symptoms using RNA‐Seq. For …
Analysis of the resistance mechanisms in sugarcane during Sporisorium scitamineum infection using RNA-seq and microscopy
Smut caused by biotrophic fungus Sporisorium scitamineum is a major disease of cultivated
sugarcane that can cause considerable yield losses. It has been suggested in literature that …
sugarcane that can cause considerable yield losses. It has been suggested in literature that …
De Novo Transcriptome Assembly and Comparative Analysis of Differentially Expressed Genes in Prunus dulcis Mill. in Response to Freezing Stress
Almond (Prunus dulcis Mill.), one of the most important nut crops, requires chilling during
winter to develop fruiting buds. However, early spring chilling and late spring frost may …
winter to develop fruiting buds. However, early spring chilling and late spring frost may …