Dual RNA-seq of pathogen and host

AJ Westermann, SA Gorski, J Vogel - Nature Reviews Microbiology, 2012 - nature.com
A comprehensive understanding of host–pathogen interactions requires a knowledge of the
associated gene expression changes in both the pathogen and the host. Traditional, probe …

Omics studies of citrus, grape and rosaceae fruit trees

K Shiratake, M Suzuki - Breeding Science, 2016 - jstage.jst.go.jp
Recent advance of bioinformatics and analytical apparatuses such as next generation DNA
sequencer (NGS) and mass spectrometer (MS) has brought a big wave of comprehensive …

Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

SK Pradhan, E Pandit, DK Nayak, L Behera… - BMC plant biology, 2019 - Springer
Background Rice plants show yellowing, stunting, withering, reduced tillering and utimately
low productivity in susceptible varieties under low temperature stress. Comparative …

RNA-seq Transcriptome Response of Flax (Linum usitatissimum L.) to the Pathogenic Fungus Fusarium oxysporum f. sp. lini

L Galindo-González, MK Deyholos - Frontiers in plant science, 2016 - frontiersin.org
Fusarium oxysporum f. sp. lini is a hemibiotrophic fungus that causes wilt in flax. Along with
rust, fusarium wilt has become an important factor in flax production worldwide. Resistant …

Deep RNA-Seq uncovers the peach transcriptome landscape

L Wang, S Zhao, C Gu, Y Zhou, H Zhou, J Ma… - Plant molecular …, 2013 - Springer
Peach (Prunus persica) is one of the most important of deciduous fruit trees worldwide. To
facilitate isolation of genes controlling important horticultural traits of peach, transcriptome …

High-throughput sequencing reveals differential expression of miRNAs in tomato inoculated with Phytophthora infestans

Y Luan, J Cui, J Zhai, J Li, L Han, J Meng - Planta, 2015 - Springer
Main conclusion The characterization and compare expression profiling of the miRNA
transcriptome lay a solid foundation for unraveling the complex miRNA-mediated regulatory …

[HTML][HTML] High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing

G Nuñez-Lillo, C Balladares, C Pavez, C Urra… - Scientia …, 2019 - Elsevier
Peach (Prunus persica) is one of the most important temperate fruit trees in the world, based
on its production and cultivated area. Consumer acceptance is the principal objective of …

Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA‐Seq

M Rubio, L Rodríguez‐Moreno… - Molecular plant …, 2015 - Wiley Online Library
Differences in gene expression were studied after P lum pox virus (PPV, sharka disease)
infection in peach GF305 leaves with and without sharka symptoms using RNA‐Seq. For …

Analysis of the resistance mechanisms in sugarcane during Sporisorium scitamineum infection using RNA-seq and microscopy

MD McNeil, SA Bhuiyan, PJ Berkman, BJ Croft… - PLoS …, 2018 - journals.plos.org
Smut caused by biotrophic fungus Sporisorium scitamineum is a major disease of cultivated
sugarcane that can cause considerable yield losses. It has been suggested in literature that …

De Novo Transcriptome Assembly and Comparative Analysis of Differentially Expressed Genes in Prunus dulcis Mill. in Response to Freezing Stress

S Mousavi, A Alisoltani, B Shiran, H Fallahi… - PloS one, 2014 - journals.plos.org
Almond (Prunus dulcis Mill.), one of the most important nut crops, requires chilling during
winter to develop fruiting buds. However, early spring chilling and late spring frost may …