[HTML][HTML] Recent advances in microbial community analysis from machine learning of multiparametric flow cytometry data

BDÖ Duygan, JR van der Meer - Current Opinion in Biotechnology, 2022 - Elsevier
Highlights•Large multiparametric flow cytometry data sets are ideal for machine learning.•
Unsupervised clustering methods highlight microbial community changes.•Supervised …

Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data

BD Özel Duygan, N Hadadi, AF Babu… - Communications …, 2020 - nature.com
The study of complex microbial communities typically entails high-throughput sequencing
and downstream bioinformatics analyses. Here we expand and accelerate microbiota …

Metal Mixture Toxicity of Ni, Cu, and Zn in Freshwater Algal Communities and the Correlation of Single‐Species Sensitivities Among Single Metals: A Comparative …

A Fettweis, S Hansul… - Environmental …, 2023 - Wiley Online Library
The effects assessment of metals is mainly based on data of single metals on single species,
thereby not accounting for effects of metal mixtures or effects of species interactions. Both of …

Extended live-cell barcoding approach for multiplexed mass cytometry

M Muftuoglu, L Li, S Liang, D Mak, AJ Lin, J Fang… - Scientific reports, 2021 - nature.com
Sample barcoding is essential in mass cytometry analysis, since it can eliminate potential
procedural variations, enhance throughput, and allow simultaneous sample processing and …

On Selecting Distance Metrics in -Dimensional Normed Vector Spaces of Cells: A Novel Criterion and Similarity Measure Towards Efficient and Accurate Omics …

O Bell, A Lee, E Engle - arXiv preprint arXiv:2306.09243, 2023 - arxiv.org
Single-cell omics enable the profiles of cells, which contain large numbers of biological
features, to be quantified. Cluster analysis, a dimensionality reduction process, is used to …

Supervised distance metric learning for pattern recognition

B Nguyen Cong - 2019 - biblio.ugent.be
Much like in other modeling disciplines does the distance metric used (a measure for
dissimilarity) play an important role in the growing field of machine learning. Often …