[HTML][HTML] High-content CRISPR screening

C Bock, P Datlinger, F Chardon, MA Coelho… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …

Design and analysis of CRISPR–Cas experiments

RE Hanna, JG Doench - Nature biotechnology, 2020 - nature.com
A large and ever-expanding set of CRISPR–Cas systems now enables the rapid and flexible
manipulation of genomes in both targeted and large-scale experiments. Numerous software …

[HTML][HTML] clusterProfiler 4.0: A universal enrichment tool for interpreting omics data

T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng… - The innovation, 2021 - cell.com
Functional enrichment analysis is pivotal for interpreting high-throughput omics data in life
science. It is crucial for this type of tool to use the latest annotation databases for as many …

A genome-scale screen for synthetic drivers of T cell proliferation

M Legut, Z Gajic, M Guarino, Z Daniloski, JA Rahman… - Nature, 2022 - nature.com
The engineering of autologous patient T cells for adoptive cell therapies has revolutionized
the treatment of several types of cancer. However, further improvements are needed to …

CD300ld on neutrophils is required for tumour-driven immune suppression

C Wang, X Zheng, J Zhang, X Jiang, J Wang, Y Li, X Li… - Nature, 2023 - nature.com
The immune-suppressive tumour microenvironment represents a major obstacle to effective
immunotherapy,. Pathologically activated neutrophils, also known as polymorphonuclear …

An organoid-based CRISPR-Cas9 screen for regulators of intestinal epithelial maturation and cell fate

SL Hansen, HL Larsen, LM Pikkupeura, G Maciag… - Science …, 2023 - science.org
Generation of functionally mature organs requires exquisite control of transcriptional
programs governing cell state transitions during development. Despite advances in …

Defining the KRAS-and ERK-dependent transcriptome in KRAS-mutant cancers

JA Klomp, JE Klomp, CA Stalnecker, KL Bryant… - Science, 2024 - science.org
How the KRAS oncogene drives cancer growth remains poorly understood. Therefore, we
established a systemwide portrait of KRAS-and extracellular signal–regulated kinase (ERK) …

Identifying cell receptors for the nanoparticle protein corona using genome screens

W Ngo, JLY Wu, ZP Lin, Y Zhang, B Bussin… - Nature Chemical …, 2022 - nature.com
Nanotechnology provides platforms to deliver medical agents to specific cells. However, the
nanoparticle's surface becomes covered with serum proteins in the blood after …

Therapeutically increasing MHC-I expression potentiates immune checkpoint blockade

SS Gu, W Zhang, X Wang, P Jiang, N Traugh, Z Li… - Cancer discovery, 2021 - AACR
Immune checkpoint blockade (ICB) therapy revolutionized cancer treatment, but many
patients with impaired MHC-I expression remain refractory. Here, we combined FACS-based …

[HTML][HTML] In vivo interaction screening reveals liver-derived constraints to metastasis

C Borrelli, M Roberts, D Eletto, MD Hussherr, H Fazilaty… - Nature, 2024 - nature.com
It is estimated that only 0.02% of disseminated tumour cells are able to seed overt
metastases. While this suggests the presence of environmental constraints to metastatic …