Identification of bacterial plasmids based on mobility and plasmid population biology

MP Garcillán-Barcia, A Alvarado… - FEMS microbiology …, 2011 - academic.oup.com
Plasmids contain a backbone of core genes that remains relatively stable for long
evolutionary periods, making sense to speak about plasmid species. The identification and …

The mosaic type IV secretion systems

PJ Christie - EcoSal Plus, 2016 - Am Soc Microbiol
Escherichia coli and other Gram-negative and-positive bacteria employ type IV secretion
systems (T4SSs) to translocate DNA and protein substrates, generally by contact-dependent …

Survival and evolution of a large multidrug resistance plasmid in new clinical bacterial hosts

A Porse, K Schønning, C Munck… - Molecular biology and …, 2016 - academic.oup.com
Large conjugative plasmids are important drivers of bacterial evolution and contribute
significantly to the dissemination of antibiotic resistance. Although plasmid borne multidrug …

Host-specific plasmid evolution explains the variable spread of clinical antibiotic-resistance plasmids

F Benz, AR Hall - Proceedings of the National Academy of …, 2023 - National Acad Sciences
Antibiotic resistance encoded on plasmids is a pressing global health problem. Predicting
which plasmids spread in the long term remains very challenging, even though some key …

[HTML][HTML] RecA inhibitors potentiate antibiotic activity and block evolution of antibiotic resistance

MK Alam, A Alhhazmi, JF DeCoteau, Y Luo… - Cell chemical …, 2016 - cell.com
Antibiotic resistance arises from the maintenance of resistance mutations or genes acquired
from the acquisition of adaptive de novo mutations or the transfer of resistance genes …

[HTML][HTML] Highly efficient gene transfer in the mouse gut microbiota is enabled by the Incl2 conjugative plasmid TP114

K Neil, N Allard, F Grenier, V Burrus… - Communications …, 2020 - nature.com
The gut microbiota is a suspected hotspot for bacterial conjugation due to its high density
and diversity of microorganisms. However, the contribution of different conjugative plasmid …

[HTML][HTML] A mathematician's guide to plasmids: an introduction to plasmid biology for modellers

I Dewan, H Uecker - Microbiology, 2023 - microbiologyresearch.org
Plasmids, extrachromosomal DNA molecules commonly found in bacterial and archaeal
cells, play an important role in bacterial genetics and evolution. Our understanding of …

Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes

WB Andreopoulos, AM Geller, M Lucke… - Nucleic acids …, 2022 - academic.oup.com
Plasmids are mobile genetic elements that play a key role in microbial ecology and
evolution by mediating horizontal transfer of important genes, such as antimicrobial …

[HTML][HTML] Genome Dynamics of Escherichia coli during Antibiotic Treatment: Transfer, Loss, and Persistence of Genetic Elements In situ of the Infant Gut

A Porse, H Gumpert, JZ Kubicek-Sutherland… - Frontiers in cellular …, 2017 - frontiersin.org
Elucidating the adaptive strategies and plasticity of bacterial genomes in situ is crucial for
understanding the epidemiology and evolution of pathogens threatening human health …

Plasmid Localization and Partition in Enterobacteriaceae

JY Bouet, BE Funnell - EcoSal Plus, 2019 - Am Soc Microbiol
Plasmids are ubiquitous in the microbial world and have been identified in almost all
species of bacteria that have been examined. Their localization inside the bacterial cell has …