CERAPP: collaborative estrogen receptor activity prediction project

K Mansouri, A Abdelaziz, A Rybacka… - Environmental …, 2016 - ehp.niehs.nih.gov
Background: Humans are exposed to thousands of man-made chemicals in the
environment. Some chemicals mimic natural endocrine hormones and, thus, have the …

Generative topographic mapping in drug design

D Horvath, G Marcou, A Varnek - Drug Discovery Today: Technologies, 2019 - Elsevier
This is a review article of Generative Topographic Mapping (GTM)–a non-linear
dimensionality reduction technique producing generative 2D maps of high-dimensional …

Predicting highly enantioselective catalysts using tunable fragment descriptors

N Tsuji, P Sidorov, C Zhu, Y Nagata… - Angewandte Chemie …, 2023 - Wiley Online Library
Catalyst optimization processes typically rely on inductive and qualitative assumptions of
chemists based on screening data. While machine learning models using molecular …

Chemspace atlas: multiscale chemography of ultralarge libraries for drug discovery

Y Zabolotna, F Bonachera, D Horvath… - Journal of Chemical …, 2022 - ACS Publications
Nowadays, drug discovery is inevitably intertwined with the usage of large compound
collections. Understanding of their chemotype composition and physicochemical property …

A novel strategy for designing the magic shotguns for distantly related target pairs

Y Luo, P Wang, M Mou, H Zheng, J Hong… - Briefings in …, 2023 - academic.oup.com
Due to its promising capacity in improving drug efficacy, polypharmacology has emerged to
be a new theme in the drug discovery of complex disease. In the process of novel multi …

Mappability of drug-like space: towards a polypharmacologically competent map of drug-relevant compounds

P Sidorov, H Gaspar, G Marcou, A Varnek… - Journal of computer …, 2015 - Springer
Intuitive, visual rendering—mapping—of high-dimensional chemical spaces (CS), is an
important topic in chemoinformatics. Such maps were so far dedicated to specific compound …

Modern level for properties prediction of iodine-containing organic compounds: the halogen bonds formed by iodine

EV Bartashevich, EA Grigoreva, ID Yushina… - Russian Chemical …, 2017 - Springer
The modern concepts on specific features of anisotropy of the electron density of valence
shells of bound atoms and chemical bonds providing the successful description of the …

Consensus QSAR models estimating acute toxicity to aquatic organisms from different trophic levels: algae, Daphnia and fish

F Lunghini, G Marcou, P Azam, MH Enrici… - SAR and QSAR in …, 2020 - Taylor & Francis
We report new consensus models estimating acute toxicity for algae, Daphnia and fish
endpoints. We assembled a large collection of 3680 public unique compounds annotated …

Challenges for kinetics predictions via neural network potentials: a Wilkinson's catalyst case

R Staub, P Gantzer, Y Harabuchi, S Maeda, A Varnek - Molecules, 2023 - mdpi.com
Ab initio kinetic studies are important to understand and design novel chemical reactions.
While the Artificial Force Induced Reaction (AFIR) method provides a convenient and …

NP navigator: a new look at the natural product chemical space

Y Zabolotna, P Ertl, D Horvath, F Bonachera… - Molecular …, 2021 - Wiley Online Library
Natural products (NPs), being evolutionary selected over millions of years to bind to
biological macromolecules, remained an important source of inspiration for medicinal …