Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology

H Sies, VV Belousov, NS Chandel, MJ Davies… - … Reviews Molecular Cell …, 2022 - nature.com
Abstract 'Reactive oxygen species'(ROS) is a generic term that defines a wide variety of
oxidant molecules with vastly different properties and biological functions that range from …

[HTML][HTML] Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

[HTML][HTML] Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale

FE Liew, R Nogle, T Abdalla, BJ Rasor, C Canter… - Nature …, 2022 - nature.com
Many industrial chemicals that are produced from fossil resources could be manufactured
more sustainably through fermentation. Here we describe the development of a carbon …

Single-pot, solid-phase-enhanced sample preparation for proteomics experiments

CS Hughes, S Moggridge, T Müller, PH Sorensen… - Nature protocols, 2019 - nature.com
A critical step in proteomics analysis is the optimal extraction and processing of protein
material to ensure the highest sensitivity in downstream detection. Achieving this requires a …

[HTML][HTML] A compact quadrupole-orbitrap mass spectrometer with FAIMS interface improves proteome coverage in short LC gradients

DB Bekker-Jensen, A Martínez-Val… - Molecular & Cellular …, 2020 - ASBMB
State-of-the-art proteomics-grade mass spectrometers can measure peptide precursors and
their fragments with ppm mass accuracy at sequencing speeds of tens of peptides per …

Evaluating the performance of the Astral mass analyzer for quantitative proteomics using data-independent acquisition

LR Heil, E Damoc, TN Arrey, A Pashkova… - Journal of proteome …, 2023 - ACS Publications
We evaluate the quantitative performance of the newly released Asymmetric Track Lossless
(Astral) analyzer. Using data-independent acquisition, the Thermo Scientific Orbitrap Astral …

[PDF][PDF] Liver-fibrosis-activated transcriptional networks govern hepatocyte reprogramming and intra-hepatic communication

A Loft, AJ Alfaro, SF Schmidt, FB Pedersen… - Cell metabolism, 2021 - cell.com
Liver fibrosis is a strong predictor of long-term mortality in individuals with metabolic-
associated fatty liver disease; yet, the mechanisms underlying the progression from the …

[HTML][HTML] Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids

A Martínez-Val, K Fort, C Koenig… - Nature …, 2023 - nature.com
Achieving sufficient coverage of regulatory phosphorylation sites by mass spectrometry (MS)-
based phosphoproteomics for signaling pathway reconstitution is challenging, especially …

Urinary proteome profiling for stratifying patients with familial Parkinson's disease

S Virreira Winter, O Karayel, MT Strauss… - EMBO molecular …, 2021 - embopress.org
The prevalence of Parkinson's disease (PD) is increasing but the development of novel
treatment strategies and therapeutics altering the course of the disease would benefit from …

[HTML][HTML] SPIN enables high throughput species identification of archaeological bone by proteomics

PL Rüther, IM Husic, P Bangsgaard… - Nature …, 2022 - nature.com
Species determination based on genetic evidence is an indispensable tool in archaeology,
forensics, ecology, and food authentication. Most available analytical approaches involve …