The ecologist's field guide to sequence‐based identification of biodiversity

S Creer, K Deiner, S Frey, D Porazinska… - Methods in ecology …, 2016 - Wiley Online Library
The past 100 years of ecological research has seen substantial progress in understanding
the natural world and likely effects of change, whether natural or anthropogenic. Traditional …

SAR11 bacteria: the most abundant plankton in the oceans

SJ Giovannoni - Annual review of marine science, 2017 - annualreviews.org
SAR11 is a group of small, carbon-oxidizing bacteria that reach a global estimated
population size of 2.4× 1028 cells—approximately 25% of all plankton. They are found …

[HTML][HTML] The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through …

PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen… - PLoS …, 2014 - journals.plos.org
Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and
inadequate to address important questions about their biology, evolution, and ecology; this …

Dispersing misconceptions and identifying opportunities for the use of'omics' in soil microbial ecology

JI Prosser - Nature Reviews Microbiology, 2015 - nature.com
Technological advances are enabling the sequencing of environmental DNA and RNA at
increasing depth and with decreasing costs. Metagenomic and transcriptomic analysis of …

Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series

YC Yeh, JA Fuhrman - ISME communications, 2022 - academic.oup.com
Community dynamics are central in microbial ecology, yet we lack studies comparing
diversity patterns among marine protists and prokaryotes over depth and multiple years …

Adaptive genetic traits in pelagic freshwater microbes

MC Chiriac, M Haber… - Environmental …, 2023 - Wiley Online Library
Pelagic microbes have adopted distinct strategies to inhabit the pelagial of lakes and
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …

[HTML][HTML] Prokaryotic life in the deep ocean's water column

GJ Herndl, B Bayer, F Baltar… - Annual Review of …, 2023 - annualreviews.org
The oceanic waters below a depth of 200 m represent, in terms of volume, the largest habitat
of the biosphere, harboring approximately 70% of the prokaryotic biomass in the oceanic …

SAR202 genomes from the dark ocean predict pathways for the oxidation of recalcitrant dissolved organic matter

Z Landry, BK Swan, GJ Herndl, R Stepanauskas… - MBio, 2017 - Am Soc Microbiol
Deep-ocean regions beyond the reach of sunlight contain an estimated 615 Pg of dissolved
organic matter (DOM), much of which persists for thousands of years. It is thought that …

SAR11 bacteria linked to ocean anoxia and nitrogen loss

D Tsementzi, J Wu, S Deutsch, S Nath… - Nature, 2016 - nature.com
Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich
surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where …

Microdiversity shapes the traits, niche space, and biogeography of microbial taxa

AA Larkin, AC Martiny - Environmental microbiology reports, 2017 - Wiley Online Library
With rapidly improving sequencing technologies, scientists have recently gained the ability
to examine diverse microbial communities at high genomic resolution, revealing that both …