The ecologist's field guide to sequence‐based identification of biodiversity
The past 100 years of ecological research has seen substantial progress in understanding
the natural world and likely effects of change, whether natural or anthropogenic. Traditional …
the natural world and likely effects of change, whether natural or anthropogenic. Traditional …
SAR11 bacteria: the most abundant plankton in the oceans
SJ Giovannoni - Annual review of marine science, 2017 - annualreviews.org
SAR11 is a group of small, carbon-oxidizing bacteria that reach a global estimated
population size of 2.4× 1028 cells—approximately 25% of all plankton. They are found …
population size of 2.4× 1028 cells—approximately 25% of all plankton. They are found …
[HTML][HTML] The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through …
Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and
inadequate to address important questions about their biology, evolution, and ecology; this …
inadequate to address important questions about their biology, evolution, and ecology; this …
Dispersing misconceptions and identifying opportunities for the use of'omics' in soil microbial ecology
JI Prosser - Nature Reviews Microbiology, 2015 - nature.com
Technological advances are enabling the sequencing of environmental DNA and RNA at
increasing depth and with decreasing costs. Metagenomic and transcriptomic analysis of …
increasing depth and with decreasing costs. Metagenomic and transcriptomic analysis of …
Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series
YC Yeh, JA Fuhrman - ISME communications, 2022 - academic.oup.com
Community dynamics are central in microbial ecology, yet we lack studies comparing
diversity patterns among marine protists and prokaryotes over depth and multiple years …
diversity patterns among marine protists and prokaryotes over depth and multiple years …
Adaptive genetic traits in pelagic freshwater microbes
MC Chiriac, M Haber… - Environmental …, 2023 - Wiley Online Library
Pelagic microbes have adopted distinct strategies to inhabit the pelagial of lakes and
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …
oceans and can be broadly categorized in two groups: free‐living, specialized oligotrophs …
[HTML][HTML] Prokaryotic life in the deep ocean's water column
The oceanic waters below a depth of 200 m represent, in terms of volume, the largest habitat
of the biosphere, harboring approximately 70% of the prokaryotic biomass in the oceanic …
of the biosphere, harboring approximately 70% of the prokaryotic biomass in the oceanic …
SAR202 genomes from the dark ocean predict pathways for the oxidation of recalcitrant dissolved organic matter
Deep-ocean regions beyond the reach of sunlight contain an estimated 615 Pg of dissolved
organic matter (DOM), much of which persists for thousands of years. It is thought that …
organic matter (DOM), much of which persists for thousands of years. It is thought that …
SAR11 bacteria linked to ocean anoxia and nitrogen loss
Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich
surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where …
surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where …
Microdiversity shapes the traits, niche space, and biogeography of microbial taxa
AA Larkin, AC Martiny - Environmental microbiology reports, 2017 - Wiley Online Library
With rapidly improving sequencing technologies, scientists have recently gained the ability
to examine diverse microbial communities at high genomic resolution, revealing that both …
to examine diverse microbial communities at high genomic resolution, revealing that both …