Gene–environment interactions in human health

E Herrera-Luis, K Benke, H Volk… - Nature Reviews …, 2024 - nature.com
Gene–environment interactions (G× E), the interplay of genetic variation with environmental
factors, have a pivotal impact on human complex traits and diseases. Statistically, G× E can …

A varying coefficient model to jointly test genetic and gene–environment interaction effects

Z Zhou, HC Ku, SE Manning, M Zhang, C Xing - Behavior genetics, 2023 - Springer
Most human traits are influenced by the interplay between genetic and environmental
factors. Many statistical methods have been proposed to screen for gene-environment …

[HTML][HTML] A generalized kernel machine approach to identify higher-order composite effects in multi-view datasets, with application to adolescent brain development …

MA Alam, C Qiu, H Shen, YP Wang… - Journal of Biomedical …, 2021 - Elsevier
In recent years, a comprehensive study of complex disease with multi-view datasets (eg,
multi-omics and imaging scans) has been a focus and forefront in biomedical research …

Pathological imaging‐assisted cancer gene–environment interaction analysis

K Fang, J Li, Q Zhang, Y Xu, S Ma - Biometrics, 2023 - Wiley Online Library
Abstract Gene–environment (G–E) interactions have important implications for cancer
outcomes and phenotypes beyond the main G and E effects. Compared to main‐effect‐only …

Identifying gene–environment interactions with robust marginal Bayesian variable selection

X Lu, K Fan, J Ren, C Wu - Frontiers in Genetics, 2021 - frontiersin.org
In high-throughput genetics studies, an important aim is to identify gene–environment
interactions associated with the clinical outcomes. Recently, multiple marginal penalization …

[HTML][HTML] VCSEL: Prioritizing SNP-set by penalized variance component selection

J Kim, J Shen, A Wang, DV Mehrotra, S Ko… - The annals of applied …, 2021 - ncbi.nlm.nih.gov
Single nucleotide polymorphism (SNP) set analysis aggregates both common and rare
variants and tests for association between phenotype (s) of interest and a set. However …

Identification of gene–environment interactions with marginal penalization

S Zhang, Y Xue, Q Zhang, C Ma, M Wu… - Genetic …, 2020 - Wiley Online Library
Abstract Gene–environment (G–E) interaction analysis has been extensively conducted for
complex diseases. In marginal analysis, the common practice is to conduct likelihood‐based …

Composite Kernel Association Test (CKAT) for SNP-set joint assessment of genotype and genotype-by-treatment interaction in Pharmacogenetics studies

H Zhang, N Zhao, DV Mehrotra, J Shen - Bioinformatics, 2020 - academic.oup.com
Motivation It is of substantial interest to discover novel genetic markers that influence drug
response in order to develop personalized treatment strategies that maximize therapeutic …

[PDF][PDF] Estimation and inference for high-dimensional nonparametric additive instrumental-variables regression

Z Niu, Y Gu, W Li - arXiv preprint arXiv:2204.00111, 2022 - ziangniu6.github.io
• When instruments and treatments are both high-dimensional, linear models have been
proposed (Lin et al., 2015; Zhu, 2018; Gold et al., 2020).• Nonlinear effects of the SNPs on …

[图书][B] Generalization of kernel machine methods for association testing of multi-omics data

A Little - 2023 - search.proquest.com
Over the past couple of decades, genome-wide association studies (GWASs) have
successfully identified thousands of loci associated with complex traits and diseases in …