Promoter editing for the genetic improvement of crops
Gene expression plays a fundamental role in the regulation of agronomically important traits
in crop plants. The genetic manipulation of plant promoters through genome editing has …
in crop plants. The genetic manipulation of plant promoters through genome editing has …
Integrating omics databases for enhanced crop breeding
H Chao, S Zhang, Y Hu, Q Ni, S Xin, L Zhao… - Journal of Integrative …, 2024 - degruyter.com
Crop plant breeding involves selecting and developing new plant varieties with desirable
traits such as increased yield, improved disease resistance, and enhanced nutritional value …
traits such as increased yield, improved disease resistance, and enhanced nutritional value …
PlantPAN 4.0: Updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters
CN Chow, CW Yang, NY Wu, HT Wang… - Nucleic acids …, 2024 - academic.oup.com
Abstract PlantPAN 4.0 (http://PlantPAN. itps. ncku. edu. tw/) is an integrative resource for
constructing transcriptional regulatory networks for diverse plant species. In this release, the …
constructing transcriptional regulatory networks for diverse plant species. In this release, the …
Systematic identification of wheat spike developmental regulators by integrated multi-omics, transcriptional network, GWAS, and genetic analyses
X Lin, Y Xu, D Wang, Y Yang, X Zhang, X Bie, L Gui… - Molecular Plant, 2024 - cell.com
The spike architecture of wheat plays a crucial role in determining grain number, making it a
key trait for optimization in wheat breeding programs. In this study, we used a multi-omic …
key trait for optimization in wheat breeding programs. In this study, we used a multi-omic …
Capture of regulatory factors via CRISPR–dCas9 for mechanistic analysis of fine-tuned SERRATE expression in Arabidopsis
SERRATE (SE) plays an important role in many biological processes and under biotic stress
resistance. However, little about the control of SE has been clarified. Here we present a …
resistance. However, little about the control of SE has been clarified. Here we present a …
Integration of multi-omics technologies for crop improvement: status and prospects
R Zhang, C Zhang, C Yu, J Dong, J Hu - Frontiers in Bioinformatics, 2022 - frontiersin.org
With the rapid development of next-generation sequencing (NGS), multi-omics techniques
have been emerging as effective approaches for crop improvement. Here, we focus mainly …
have been emerging as effective approaches for crop improvement. Here, we focus mainly …
scPlant: A versatile framework for single-cell transcriptomic data analysis in plants
S Cao, Z He, R Chen, Y Luo, LY Fu, X Zhou, C He… - Plant …, 2023 - cell.com
Single-cell transcriptomics has been fully embraced in plant biological research and is
revolutionizing our understanding of plant growth, development, and responses to external …
revolutionizing our understanding of plant growth, development, and responses to external …
PPGR: a comprehensive perennial plant genomes and regulation database
S Yang, W Zong, L Shi, R Li, Z Ma, S Ma… - Nucleic Acids …, 2024 - academic.oup.com
Perennial woody plants hold vital ecological significance, distinguished by their unique
traits. While significant progress has been made in their genomic and functional studies, a …
traits. While significant progress has been made in their genomic and functional studies, a …
Nitrogen sensing and regulatory networks: it's about time and space
A plant's response to external and internal nitrogen signals/status relies on sensing and
signaling mechanisms that operate across spatial and temporal dimensions. From a …
signaling mechanisms that operate across spatial and temporal dimensions. From a …
Genome‐wide enhancer identification by massively parallel reporter assay in Arabidopsis
Y Tan, X Yan, J Sun, J Wan, X Li, Y Huang… - The Plant …, 2023 - Wiley Online Library
Enhancers are critical cis‐regulatory elements controlling gene expression during cell
development and differentiation. However, genome‐wide enhancer characterization has …
development and differentiation. However, genome‐wide enhancer characterization has …