In Silico Tools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review

M Yazar, P Özbek - OMICS: A Journal of Integrative Biology, 2021 - liebertpub.com
Single-nucleotide polymorphisms (SNPs) are single-base variants that contribute to human
biological variation and pathogenesis of many human diseases. Among all SNP types …

Structure-based virtual screening to discover potential lead molecules for the SARS-CoV-2 main protease

A Gahlawat, N Kumar, R Kumar… - Journal of chemical …, 2020 - ACS Publications
The COVID-19 disease is caused by a new strain of the coronavirus family (SARS-CoV-2),
and it has affected at present millions of people all over the world. The indispensable role of …

[PDF][PDF] Corona virus drugs–a brief overview of past, present and future

SH Basha - Journal of PeerScientist, 2020 - peerscientist.com
A novel coronavirus (CoV), SARS-CoV-2 surfaced in late 2019 in Wuhan, China. SARS-CoV-
2, unlike previously identified coronaviruses responsible for severe acute respiratory …

Rhapsody: predicting the pathogenicity of human missense variants

L Ponzoni, DA Peñaherrera, ZN Oltvai, I Bahar - Bioinformatics, 2020 - academic.oup.com
Motivation The biological effects of human missense variants have been studied
experimentally for decades but predicting their effects in clinical molecular diagnostics …

In-silico anti-inflammatory potential of guaiane dimers from Xylopia vielana targeting COX-2

SS Hassan, WD Zhang, H Jin, SH Basha… - Journal of …, 2022 - Taylor & Francis
Natural products of herbal origin are prodigious to display diverse pharmacological
activities. In the present study, five guaiane-type sesquiterpene dimers, xylopidimers A− E (1 …

Inhibition of Inducible Nitric Oxide Synthase (iNOS) by Andrographolide and In Vitro Evaluation of Its Antiproliferative and Proapoptotic Effects on Cervical Cancer

A Pasha, DV Kumbhakar, R Doneti… - Oxidative Medicine …, 2021 - Wiley Online Library
This work is aimed at investigating the expression levels of inducible nitric oxide synthase
(iNOS) in cervical cancer and identifying a potential iNOS inhibitor. The data mining studies …

Computational SNP analysis and molecular simulation revealed the most deleterious missense variants in the NBD1 domain of human ABCA1 transporter

R Dash, MC Ali, ML Rana, YA Munni, L Barua… - International Journal of …, 2020 - mdpi.com
The ATP-binding cassette transporter A1 (ABCA1) is a membrane-bound exporter protein
involved in regulating serum HDL level by exporting cholesterol and phospholipids to load …

In Silico Approaches for Investigating the Binding Propensity of Apigenin and Luteolin Against Class I HDAC Isoforms

SA Ganai, Z Farooq, S Banday… - Future medicinal …, 2018 - Taylor & Francis
Aim: Aberrant activity of class I histone deacetylases (HDACs) has strong implications for
various cancers. Targeting these HDACs with synthetic HDAC inhibitors has shown …

Computational insights into mechanism of AIM4-mediated inhibition of aggregation of TDP-43 protein implicated in ALS and evidence for in vitro inhibition of liquid …

A Girdhar, V Bharathi, VR Tiwari, S Abhishek… - International journal of …, 2020 - Elsevier
Abstract TDP-43 is an RNA/DNA-binding protein which is also implicated in the
pathogenesis of amyotrophic lateral sclerosis (ALS) disease. TDP-43's cytoplasmic mis …

A spectroscopic and computational intervention of interaction of lysozyme with 6-mercaptopurine

BC Swain, SK Mukherjee, J Rout, Sakshi… - Analytical and …, 2020 - Springer
In the present work, biophysical insight into the binding interactions of the protein, hen egg
white (HEW) lysozyme (Lyz) with an anticancer drug, 6-mercaptopurine (6-MP)‚was …