[HTML][HTML] The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth

KE De Visser, JA Joyce - Cancer cell, 2023 - cell.com
Cancers represent complex ecosystems comprising tumor cells and a multitude of non-
cancerous cells, embedded in an altered extracellular matrix. The tumor microenvironment …

Cancer stem cells: advances in knowledge and implications for cancer therapy

X Chu, W Tian, J Ning, G Xiao, Y Zhou… - … and Targeted Therapy, 2024 - nature.com
Cancer stem cells (CSCs), a small subset of cells in tumors that are characterized by self-
renewal and continuous proliferation, lead to tumorigenesis, metastasis, and maintain tumor …

Tumor-associated myeloid cells: diversity and therapeutic targeting

A Mantovani, F Marchesi, S Jaillon… - Cellular & molecular …, 2021 - nature.com
Myeloid cells in tumor tissues constitute a dynamic immune population characterized by a
non-uniform phenotype and diverse functional activities. Both tumor-associated …

Supervised discovery of interpretable gene programs from single-cell data

RZ Kunes, T Walle, M Land, T Nawy, D Pe'er - Nature Biotechnology, 2024 - nature.com
Factor analysis decomposes single-cell gene expression data into a minimal set of gene
programs that correspond to processes executed by cells in a sample. However, matrix …

A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data

A De Falco, F Caruso, XD Su, A Iavarone… - Nature …, 2023 - nature.com
Single-cell RNA sequencing is the reference technology to characterize the composition of
the tumor microenvironment and to study tumor heterogeneity at high resolution. Here we …

Tumor macrophage functional heterogeneity can inform the development of novel cancer therapies

I Nasir, C McGuinness, AR Poh, M Ernst, PK Darcy… - Trends in …, 2023 - cell.com
Macrophages represent a key component of the tumor microenvironment (TME) and are
largely associated with poor prognosis. Therapeutic targeting of macrophages has …

[HTML][HTML] A correctable immune niche for epithelial stem cell reprogramming and post-viral lung diseases

K Wu, Y Zhang, H Yin-DeClue, K Sun, D Mao… - The Journal of Clinical …, 2024 - jci.org
Epithelial barriers are programmed for defense and repair but are also the site of long-term
structural remodeling and disease. In general, this paradigm features epithelial stem cells …

Macrophages and cancer stem cells: a malevolent alliance

P Allavena, E Digifico, C Belgiovine - Molecular Medicine, 2021 - Springer
Myeloid cells infiltrating tumors are gaining ever growing attention in the last years because
their pro-tumor and immunosuppressive functions are relevant for disease progression and …

GPNMB: a potent inducer of immunosuppression in cancer

AM Lazaratos, MG Annis, PM Siegel - Oncogene, 2022 - nature.com
The immune system is comprised of both innate and adaptive immune cells, which, in the
context of cancer, collectively function to eliminate tumor cells. However, tumors can actively …

Targeting tumor-associated macrophages in anti-cancer therapies: convincing the traitors to do the right thing

C Belgiovine, E Digifico, C Anfray, A Ummarino… - Journal of Clinical …, 2020 - mdpi.com
In the last decade, it has been well-established that tumor-infiltrating myeloid cells fuel not
only the process of carcinogenesis through cancer-related inflammation mechanisms, but …