Predicting the effects of amino acid substitutions on protein function
PC Ng, S Henikoff - Annu. Rev. Genomics Hum. Genet., 2006 - annualreviews.org
Nonsynonymous single nucleotide polymorphisms (nsSNPs) are coding variants that
introduce amino acid changes in their corresponding proteins. Because nsSNPs can affect …
introduce amino acid changes in their corresponding proteins. Because nsSNPs can affect …
Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods
J Thusberg, M Vihinen - Human mutation, 2009 - Wiley Online Library
Many gene defects are relatively easy to identify experimentally, but obtaining information
about the effects of sequence variations and elucidation of the detailed molecular …
about the effects of sequence variations and elucidation of the detailed molecular …
Loss of protein structure stability as a major causative factor in monogenic disease
The most common cause of monogenic disease is a single base DNA variant resulting in an
amino acid substitution. In a previous study, we observed that a high fraction of these …
amino acid substitution. In a previous study, we observed that a high fraction of these …
Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity
EA Stone, A Sidow - Genome research, 2005 - genome.cshlp.org
We find that the degree of impairment of protein function by missense variants is predictable
by comparative sequence analysis alone. The applicable range of impairment is not …
by comparative sequence analysis alone. The applicable range of impairment is not …
Genetic variation in an individual human exome
PC Ng, S Levy, J Huang, TB Stockwell, BP Walenz… - PLoS …, 2008 - journals.plos.org
There is much interest in characterizing the variation in a human individual, because this
may elucidate what contributes significantly to a person's phenotype, thereby enabling …
may elucidate what contributes significantly to a person's phenotype, thereby enabling …
Association of Common CRP Gene Variants with CRP Levels and Cardiovascular Events
DT Miller, RYL Zee, J Suk Danik… - Annals of human …, 2005 - Wiley Online Library
C‐reactive protein (CRP) is a well‐documented marker of atherosclerotic cardiovascular
disease risk. We resequenced CRP to identify a comprehensive set of common SNP …
disease risk. We resequenced CRP to identify a comprehensive set of common SNP …
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis
S Mooney - Briefings in bioinformatics, 2005 - academic.oup.com
Since the initial sequencing of the human genome, many projects are underway to
understand the effects of genetic variation between individuals. Predicting and …
understand the effects of genetic variation between individuals. Predicting and …
Novel insights from hybrid LacI/GalR proteins: family-wide functional attributes and biologically significant variation in transcription repression
S Meinhardt, MW Manley Jr, NA Becker… - Nucleic acids …, 2012 - academic.oup.com
LacI/GalR transcription regulators have extensive, non-conserved interfaces between their
regulatory domains and the 18 amino acids that serve as 'linkers' to their DNA-binding …
regulatory domains and the 18 amino acids that serve as 'linkers' to their DNA-binding …
Mammalian evolution and biomedicine: new views from phylogeny
MS Springer, WJ Murphy - Biological Reviews, 2007 - Wiley Online Library
Recent progress resolving the phylogenetic relationships of the major lineages of mammals
has had a broad impact in evolutionary biology, comparative genomics and the biomedical …
has had a broad impact in evolutionary biology, comparative genomics and the biomedical …
The bile/arsenite/riboflavin transporter (BART) superfamily
NM Mansour, M Sawhney, DG Tamang… - The FEBS …, 2007 - Wiley Online Library
Secondary transmembrane transport carriers fall into families and superfamilies allowing
prediction of structure and function. Here we describe hundreds of sequenced homologues …
prediction of structure and function. Here we describe hundreds of sequenced homologues …