[HTML][HTML] Bacterial vaginosis: current diagnostic avenues and future opportunities
A healthy female genital tract harbors a microbiome dominated by lactic acid and hydrogen
peroxide producing bacteria, which provide protection against infections by maintaining a …
peroxide producing bacteria, which provide protection against infections by maintaining a …
[HTML][HTML] The future agricultural biogas plant in Germany: A vision
S Theuerl, C Herrmann, M Heiermann, P Grundmann… - Energies, 2019 - mdpi.com
After nearly two decades of subsidized and energy crop-oriented development, agricultural
biogas production in Germany is standing at a crossroads. Fundamental challenges need to …
biogas production in Germany is standing at a crossroads. Fundamental challenges need to …
Primer, pipelines, parameters: issues in 16S rRNA gene sequencing
I Abellan-Schneyder, MS Matchado, S Reitmeier… - Msphere, 2021 - Am Soc Microbiol
Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies
investigating microbiomes. However, comparative studies on differences in procedures are …
investigating microbiomes. However, comparative studies on differences in procedures are …
[HTML][HTML] Interpretations of environmental microbial community studies are biased by the selected 16S rRNA (gene) amplicon sequencing pipeline
D Straub, N Blackwell, A Langarica-Fuentes… - Frontiers in …, 2020 - frontiersin.org
One of the major methods to identify microbial community composition, to unravel microbial
population dynamics, and to explore microbial diversity in environmental samples is high …
population dynamics, and to explore microbial diversity in environmental samples is high …
The newest Oxford Nanopore R10. 4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling
T Zhang, H Li, S Ma, J Cao, H Liao… - Applied and …, 2023 - Am Soc Microbiol
The long-read amplicon provides a species-level solution for the community. With the
improvement of nanopore flowcells, the accuracy of Oxford Nanopore Technologies (ONT) …
improvement of nanopore flowcells, the accuracy of Oxford Nanopore Technologies (ONT) …
[HTML][HTML] A preliminary study on the potential of Nanopore MinION and Illumina MiSeq 16S rRNA gene sequencing to characterize building-dust microbiomes
AB Nygaard, HS Tunsjø, R Meisal, C Charnock - Scientific Reports, 2020 - nature.com
There is a growing awareness of the importance of indoor microbiomes for human health.
Given their complexity, these microbiomes can only be adequately surveyed using high …
Given their complexity, these microbiomes can only be adequately surveyed using high …
[HTML][HTML] Freshwater monitoring by nanopore sequencing
While traditional microbiological freshwater tests focus on the detection of specific bacterial
indicator species, including pathogens, direct tracing of all aquatic DNA through …
indicator species, including pathogens, direct tracing of all aquatic DNA through …
Quantitative PCR based detection system for cyanobacterial geosmin/2-methylisoborneol (2-MIB) events in drinking water sources: Current status and challenges
Taste and odor (T&O) are an important issue in drinking water, aquaculture, recreation and a
few other associated industries, and cyanobacteria-relevant geosmin and 2 …
few other associated industries, and cyanobacteria-relevant geosmin and 2 …
[HTML][HTML] Does intraspecific variation in rDNA copy number affect analysis of microbial communities?
Amplicon sequencing of partial regions of the ribosomal RNA loci (rDNA) is widely used to
profile microbial communities. However, the rDNA is dynamic and can exhibit substantial …
profile microbial communities. However, the rDNA is dynamic and can exhibit substantial …
Relative performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) third-generation sequencing instruments in identification of …
Culture-based molecular identification methods have revolutionized detection of pathogens,
yet these methods are slow and may yield inconclusive results from environmental …
yet these methods are slow and may yield inconclusive results from environmental …