HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation

MM Hasan, N Schaduangrat, S Basith, G Lee… - …, 2020 - academic.oup.com
Motivation Therapeutic peptides failing at clinical trials could be attributed to their toxicity
profiles like hemolytic activity, which hamper further progress of peptides as drug …

Critical evaluation of web-based DNA N6-methyladenine site prediction tools

MM Hasan, W Shoombuatong, H Kurata… - Briefings in …, 2021 - academic.oup.com
Methylation of DNA N6-methyladenosine (6mA) is a type of epigenetic modification that
plays pivotal roles in various biological processes. The accurate genome-wide identification …

Computational prediction and interpretation of cell-specific replication origin sites from multiple eukaryotes by exploiting stacking framework

L Wei, W He, A Malik, R Su, L Cui… - Briefings in …, 2021 - academic.oup.com
Origins of replication sites (ORIs), which refers to the initiative locations of genomic DNA
replication, play essential roles in DNA replication process. Detection of ORIs' distribution in …

Design powerful predictor for mRNA subcellular location prediction in Homo sapiens

ZY Zhang, YH Yang, H Ding, D Wang… - Briefings in …, 2021 - academic.oup.com
Messenger RNAs (mRNAs) shoulder special responsibilities that transmit genetic code from
DNA to discrete locations in the cytoplasm. The locating process of mRNA might provide …

SAPPHIRE: A stacking-based ensemble learning framework for accurate prediction of thermophilic proteins

P Charoenkwan, N Schaduangrat, MA Moni… - Computers in Biology …, 2022 - Elsevier
Thermophilic proteins (TPPs) are important in the field of protein biochemistry and
development of new enzymes. Thus, computational methods must be urgently developed to …

Comparative analysis of machine learning-based approaches for identifying therapeutic peptides targeting SARS-CoV-2

B Manavalan, S Basith, G Lee - Briefings in bioinformatics, 2022 - academic.oup.com
Abstract Coronavirus disease 2019 (COVID-19) has impacted public health as well as
societal and economic well-being. In the last two decades, various prediction algorithms and …

A computational platform to identify origins of replication sites in eukaryotes

FY Dao, H Lv, H Zulfiqar, H Yang, W Su… - Briefings in …, 2021 - academic.oup.com
The locations of the initiation of genomic DNA replication are defined as origins of
replication sites (ORIs), which regulate the onset of DNA replication and play significant …

StackDPPIV: A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptides

P Charoenkwan, C Nantasenamat, MM Hasan… - Methods, 2022 - Elsevier
The development of efficient and effective bioinformatics tools and pipelines for identifying
peptides with dipeptidyl peptidase IV (DPP-IV) inhibitory activities from large-scale protein …

Identification of sub-Golgi protein localization by use of deep representation learning features

Z Lv, P Wang, Q Zou, Q Jiang - Bioinformatics, 2020 - academic.oup.com
Abstract Motivation The Golgi apparatus has a key functional role in protein biosynthesis
within the eukaryotic cell with malfunction resulting in various neurodegenerative diseases …

i6mA-Fuse: improved and robust prediction of DNA 6 mA sites in the Rosaceae genome by fusing multiple feature representation

MM Hasan, B Manavalan, W Shoombuatong… - Plant molecular …, 2020 - Springer
Abstract DNA N 6-methyladenine (6 mA) is one of the most vital epigenetic modifications
and involved in controlling the various gene expression levels. With the avalanche of DNA …