Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
Many research questions in fields such as personalized medicine, drug screens or systems
biology depend on obtaining consistent and quantitatively accurate proteomics data from …
biology depend on obtaining consistent and quantitatively accurate proteomics data from …
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics
Skyline is a freely available, open‐source Windows client application for accelerating
targeted proteomics experimentation, with an emphasis on the proteomics and mass …
targeted proteomics experimentation, with an emphasis on the proteomics and mass …
A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition
V Vidova, Z Spacil - Analytica chimica acta, 2017 - Elsevier
Mass spectrometry (MS) based proteomics have achieved a near-complete proteome
coverage in humans and in several other organisms, producing a wealth of information …
coverage in humans and in several other organisms, producing a wealth of information …
Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions
P Picotti, R Aebersold - Nature methods, 2012 - nature.com
Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that is
emerging in the field of proteomics as a complement to untargeted shotgun methods. SRM is …
emerging in the field of proteomics as a complement to untargeted shotgun methods. SRM is …
Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
M Bantscheff, S Lemeer, MM Savitski… - Analytical and bioanalytical …, 2012 - Springer
Mass-spectrometry-based proteomics is continuing to make major contributions to the
discovery of fundamental biological processes and, more recently, has also developed into …
discovery of fundamental biological processes and, more recently, has also developed into …
[HTML][HTML] Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome
U Kusebauch, DS Campbell, EW Deutsch, CS Chu… - Cell, 2016 - cell.com
The ability to reliably and reproducibly measure any protein of the human proteome in any
tissue or cell type would be transformative for understanding systems-level properties as …
tissue or cell type would be transformative for understanding systems-level properties as …
MaxQuant enables high peptide identification rates, individualized ppb-range mass accuracies and proteome-wide protein quantification
Efficient analysis of very large amounts of raw data for peptide identification and protein
quantification is a principal challenge in mass spectrometry (MS)-based proteomics. Here …
quantification is a principal challenge in mass spectrometry (MS)-based proteomics. Here …
The quantitative proteome of a human cell line
The generation of mathematical models of biological processes, the simulation of these
processes under different conditions, and the comparison and integration of multiple data …
processes under different conditions, and the comparison and integration of multiple data …
Using i RT, a normalized retention time for more targeted measurement of peptides
Multiple reaction monitoring (MRM) has recently become the method of choice for targeted
quantitative measurement of proteins using mass spectrometry. The method, however, is …
quantitative measurement of proteins using mass spectrometry. The method, however, is …
Widespread changes in protein synthesis induced by microRNAs
Animal microRNAs (miRNAs) regulate gene expression by inhibiting translation and/or by
inducing degradation of target messenger RNAs. It is unknown how much translational …
inducing degradation of target messenger RNAs. It is unknown how much translational …