Understudied proteins: opportunities and challenges for functional proteomics
Most research aiming at understanding the molecular foundations of life and disease has
focused on a limited set of increasingly well-known proteins while the biological functions of …
focused on a limited set of increasingly well-known proteins while the biological functions of …
Artificial intelligence-based multi-omics analysis fuels cancer precision medicine
With biotechnological advancements, innovative omics technologies are constantly
emerging that have enabled researchers to access multi-layer information from the genome …
emerging that have enabled researchers to access multi-layer information from the genome …
A knowledge graph to interpret clinical proteomics data
Implementing precision medicine hinges on the integration of omics data, such as
proteomics, into the clinical decision-making process, but the quantity and diversity of …
proteomics, into the clinical decision-making process, but the quantity and diversity of …
AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics
Abstract Machine learning and in particular deep learning (DL) are increasingly important in
mass spectrometry (MS)-based proteomics. Recent DL models can predict the retention …
mass spectrometry (MS)-based proteomics. Recent DL models can predict the retention …
Artificial intelligence for proteomics and biomarker discovery
There is an avalanche of biomedical data generation and a parallel expansion in
computational capabilities to analyze and make sense of these data. Starting with genome …
computational capabilities to analyze and make sense of these data. Starting with genome …
Making single-cell proteomics biologically relevant
Recent technological advances in mass spectrometry promise to add single-cell proteomics
to the biologist's toolbox. Here we discuss the current status and what is needed for this …
to the biologist's toolbox. Here we discuss the current status and what is needed for this …
Accurate de novo peptide sequencing using fully convolutional neural networks
De novo peptide sequencing, which does not rely on a comprehensive target sequence
database, provides us with a way to identify novel peptides from tandem mass spectra …
database, provides us with a way to identify novel peptides from tandem mass spectra …
A genetic engineering strategy for editing near-infrared-II fluorophores
R Tian, X Feng, L Wei, D Dai, Y Ma, H Pan… - Nature …, 2022 - nature.com
The second near-infrared (NIR-II) window is a fundamental modality for deep-tissue in vivo
imaging. However, it is challenging to synthesize NIR-II probes with high quantum yields …
imaging. However, it is challenging to synthesize NIR-II probes with high quantum yields …
Immobility-associated thromboprotection is conserved across mammalian species from bear to human
M Thienel, JB Müller-Reif, Z Zhang, V Ehreiser, J Huth… - Science, 2023 - science.org
Venous thromboembolism (VTE) comprising deep venous thrombosis and pulmonary
embolism is a major cause of morbidity and mortality. Short-term immobility-related …
embolism is a major cause of morbidity and mortality. Short-term immobility-related …
Trapped ion mobility spectrometry and parallel accumulation–serial fragmentation in proteomics
Recent advances in efficiency and ease of implementation have rekindled interest in ion
mobility spectrometry, a technique that separates gas phase ions by their size and shape …
mobility spectrometry, a technique that separates gas phase ions by their size and shape …