[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
Diversification of mammalian deltaviruses by host shifting
Hepatitis delta virus (HDV) is an unusual RNA agent that replicates using host machinery
but exploits hepatitis B virus (HBV) to mobilize its spread within and between hosts. In doing …
but exploits hepatitis B virus (HBV) to mobilize its spread within and between hosts. In doing …
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2
Long-read sequencing technologies have improved significantly since their emergence.
Their read lengths, potentially spanning entire transcripts, is advantageous for …
Their read lengths, potentially spanning entire transcripts, is advantageous for …
Advances in long-read single-cell transcriptomics
Long-read single-cell transcriptomics (scRNA-Seq) is revolutionizing the way we profile
heterogeneity in disease. Traditional short-read scRNA-Seq methods are limited in their …
heterogeneity in disease. Traditional short-read scRNA-Seq methods are limited in their …
Identification and analysis of odorant receptors expressed in the two main olfactory organs, antennae and palps, of Schistocerca americana
A Boronat-Garcia, J Iben, E Dominguez-Martin… - Scientific Reports, 2022 - nature.com
Locusts depend upon their sense of smell and provide useful models for understanding
olfaction. Extending this understanding requires knowledge of the molecular and structural …
olfaction. Extending this understanding requires knowledge of the molecular and structural …
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas
Frugivory evolved multiple times in mammals, including bats. However, the cellular and
molecular components driving it remain largely unknown. Here, we use integrative single …
molecular components driving it remain largely unknown. Here, we use integrative single …
De novo transcriptome assemblies of C3 and C4 non-model grass species reveal key differences in leaf development
Background C4 photosynthesis is a mechanism that plants have evolved to reduce the rate
of photorespiration during the carbon fixation process. The C4 pathway allows plants to …
of photorespiration during the carbon fixation process. The C4 pathway allows plants to …
Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats
YT Gutierrez-Guerrero, E Ibarra-Laclette… - …, 2020 - academic.oup.com
Abstract Background The New World leaf-nosed bats (Phyllostomids) exhibit a diverse
spectrum of feeding habits and innovations in their nutrient acquisition and foraging …
spectrum of feeding habits and innovations in their nutrient acquisition and foraging …
Dynamic chromatin architectures provide insights into the genetics of cattle myogenesis
J Cheng, X Cao, X Wang, J Wang, B Yue… - Journal of Animal …, 2023 - Springer
Background Sharply increased beef consumption is propelling the genetic improvement
projects of beef cattle in China. Three-dimensional genome structure is confirmed to be an …
projects of beef cattle in China. Three-dimensional genome structure is confirmed to be an …
Insights into the species evolution of Calanus copepods in the northern seas revealed by de novo transcriptome sequencing
Copepods of the zooplankton genus Calanus play a key role in marine ecosystems in the
northern seas. Although being among the most studied organisms on Earth, due to their …
northern seas. Although being among the most studied organisms on Earth, due to their …