Parallel reaction monitoring: a targeted experiment performed using high resolution and high mass accuracy mass spectrometry

N Rauniyar - International journal of molecular sciences, 2015 - mdpi.com
The parallel reaction monitoring (PRM) assay has emerged as an alternative method of
targeted quantification. The PRM assay is performed in a high resolution and high mass …

[HTML][HTML] Covalent fragment libraries in drug discovery

A Keeley, L Petri, P Ábrányi-Balogh, GM Keserű - Drug Discovery Today, 2020 - Elsevier
Highlights•Overview on available covalent warheads.•Design principles of covalent
fragment libraries.•Surrogate assay methodologies for testing reactivity.•Covalent screening …

Autophagy maintains tumour growth through circulating arginine

L Poillet-Perez, X Xie, LE Zhan, Y Yang, DW Sharp… - Nature, 2018 - nature.com
Autophagy captures intracellular components and delivers them to lysosomes, where they
are degraded and recycled to sustain metabolism and to enable survival during starvation …

Interactome rewiring following pharmacological targeting of BET bromodomains

JP Lambert, S Picaud, T Fujisawa, H Hou, P Savitsky… - Molecular cell, 2019 - cell.com
Targeting bromodomains (BRDs) of the bromo-and-extra-terminal (BET) family offers
opportunities for therapeutic intervention in cancer and other diseases. Here, we profile the …

[HTML][HTML] Kinetics and mechanism of mammalian mitochondrial ribosome assembly

DF Bogenhagen, AG Ostermeyer-Fay, JD Haley… - Cell reports, 2018 - cell.com
Mammalian mtDNA encodes only 13 proteins, all essential components of respiratory
complexes, synthesized by mitochondrial ribosomes. Mitoribosomes contain greatly …

Leveraging multilayered “omics” data for atopic dermatitis: a road map to precision medicine

D Ghosh, JA Bernstein, GK Khurana Hershey… - Frontiers in …, 2018 - frontiersin.org
Atopic dermatitis (AD) is a complex multifactorial inflammatory skin disease that affects~ 280
million people worldwide. About 85% of AD cases begin in childhood, a significant portion of …

A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development …

P Tripathi, RC Rabara, RN Reese, MA Miller, JS Rohila… - Bmc Genomics, 2016 - Springer
Background The purpose of this project was to identify metabolites, proteins, genes, and
promoters associated with water stress responses in soybean. A number of these may serve …

A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen

Y Sheng, JH Hong, R Doherty, T Srikumar… - Molecular & Cellular …, 2012 - ASBMB
Here we describe a systematic structure-function analysis of the human ubiquitin (Ub) E2
conjugating proteins, consisting of the determination of 15 new high-resolution three …

Protein context shapes the specificity of SH3 domain-mediated interactions in vivo

U Dionne, É Bourgault, AK Dubé, D Bradley… - Nature …, 2021 - nature.com
Protein–protein interactions (PPIs) between modular binding domains and their target
peptide motifs are thought to largely depend on the intrinsic binding specificities of the …

Proteomic insight into the molecular function of the vitreous

JM Skeie, CN Roybal, VB Mahajan - PloS one, 2015 - journals.plos.org
The human vitreous contains primarily water, but also contains proteins which have yet to be
fully characterized. To gain insight into the four vitreous substructures and their potential …