The intestinal microbiome and estrogen receptor–positive female breast cancer

M Kwa, CS Plottel, MJ Blaser… - Journal of the National …, 2016 - academic.oup.com
The huge communities of residential microbes, including bacteria, viruses, Archaea, and
Eukaryotes, that colonize humans are increasingly recognized as playing important roles in …

[HTML][HTML] Multiplexed immunohistochemistry, imaging, and quantitation: a review, with an assessment of Tyramide signal amplification, multispectral imaging and …

EC Stack, C Wang, KA Roman, CC Hoyt - Methods, 2014 - Elsevier
Tissue sections offer the opportunity to understand a patient's condition, to make better
prognostic evaluations and to select optimum treatments, as evidenced by the place …

Validation of multiplex immunofluorescence panels using multispectral microscopy for immune-profiling of formalin-fixed and paraffin-embedded human tumor tissues

ER Parra, N Uraoka, M Jiang, P Cook, D Gibbons… - Scientific reports, 2017 - nature.com
Immune-profiling is becoming an important tool to identify predictive markers for the
response to immunotherapy. Our goal was to validate multiplex immunofluorescence (mIF) …

Mass cytometry imaging for the study of human diseases—applications and data analysis strategies

H Baharlou, NP Canete, AL Cunningham… - Frontiers in …, 2019 - frontiersin.org
High parameter imaging is an important tool in the life sciences for both discovery and
healthcare applications. Imaging Mass Cytometry (IMC) and Multiplexed Ion Beam Imaging …

Quantification of tumor heterogeneity: from data acquisition to metric generation

A Kashyap, MA Rapsomaniki, V Barros… - Trends in …, 2022 - cell.com
Tumors are unique and complex ecosystems, in which heterogeneous cell subpopulations
with variable molecular profiles, aggressiveness, and proliferation potential coexist and …

[HTML][HTML] Mapping spatial heterogeneity in the tumor microenvironment: a new era for digital pathology

A Heindl, S Nawaz, Y Yuan - Laboratory investigation, 2015 - Elsevier
The emergent field of digital pathology employing automated image analysis techniques is
to revolutionize traditional pathology at the center of clinical diagnostics. Histological images …

[HTML][HTML] Beyond immune density: critical role of spatial heterogeneity in estrogen receptor-negative breast cancer

S Nawaz, A Heindl, K Koelble, Y Yuan - Modern Pathology, 2015 - Elsevier
The abundance of tumor-infiltrating lymphocytes has been associated with a favorable
prognosis in estrogen receptor-negative breast cancer. However, a high degree of spatial …

Breast cancer induces systemic immune changes on cytokine signaling in peripheral blood monocytes and lymphocytes

L Wang, DL Simons, X Lu, TY Tu, C Avalos… - …, 2020 - thelancet.com
Background It is increasingly recognized that cancer progression induces systemic immune
changes in the host. Alterations in number and function of immune cells have been identified …

Immuno-profiling and cellular spatial analysis using five immune oncology multiplex immunofluorescence panels for paraffin tumor tissue

ER Parra, MC Ferrufino-Schmidt, A Tamegnon… - Scientific reports, 2021 - nature.com
Multiplex immunofluorescence (mIF) has arisen as an important tool for immuno-profiling
tumor tissues. We updated our manual protocol into an automated protocol that allows the …

Prognostic significance of immune cell populations identified by machine learning in colorectal cancer using routine hematoxylin and eosin–stained sections

JP Väyrynen, MC Lau, K Haruki, SA Väyrynen… - Clinical Cancer …, 2020 - AACR
Purpose: Although high T-cell density is a well-established favorable prognostic factor in
colorectal cancer, the prognostic significance of tumor-associated plasma cells, neutrophils …