A network-based perspective in Alzheimer's disease: current state and an integrative framework
A Dragomir, AG Vrahatis… - IEEE journal of …, 2018 - ieeexplore.ieee.org
A major rise in the prevalence and impact of Alzheimer's disease (AD) is projected in the
coming decades, resulting from increasing life expectancy, thus leading to substantially …
coming decades, resulting from increasing life expectancy, thus leading to substantially …
[HTML][HTML] Computational dynamic approaches for temporal omics data with applications to systems medicine
Y Liang, A Kelemen - BioData mining, 2017 - Springer
Modeling and predicting biological dynamic systems and simultaneously estimating the
kinetic structural and functional parameters are extremely important in systems and …
kinetic structural and functional parameters are extremely important in systems and …
Pathway analysis using XGBoost classification in Biomedical Data
GN Dimitrakopoulos, AG Vrahatis… - Proceedings of the 10th …, 2018 - dl.acm.org
Given the fact that our biological existence is rooted in a complex system within our cells
with thousands of interactions among genes and metabolites, research community in …
with thousands of interactions among genes and metabolites, research community in …
[HTML][HTML] Colorectal cancer characterization and therapeutic target prediction based on microRNA expression profile
P Xu, Y Zhu, B Sun, Z Xiao - Scientific reports, 2016 - nature.com
Colorectal cancer (CRC) is one of the most commonly diagnosed cancers and a major
cause of cancer death. However, the molecular mechanisms underlying CRC initiation …
cause of cancer death. However, the molecular mechanisms underlying CRC initiation …
Whole‐genome sequencing reveals forgotten lineages and recurrent hybridizations within the kelp genus Alaria (Phaeophyceae)
TT Bringloe, D Zaparenkov, S Starko… - Journal of …, 2021 - Wiley Online Library
The genomic era continues to revolutionize our understanding of the evolution of
biodiversity. In phycology, emphasis remains on assembling nuclear and organellar …
biodiversity. In phycology, emphasis remains on assembling nuclear and organellar …
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments
DEsubs is a network-based systems biology R package that extracts disease-perturbed
subpathways within a pathway network as recorded by RNA-seq experiments. It contains an …
subpathways within a pathway network as recorded by RNA-seq experiments. It contains an …
[HTML][HTML] Detecting disease specific pathway substructures through an integrated systems biology approach
In the era of network medicine, pathway analysis methods play a central role in the
prediction of phenotype from high throughput experiments. In this paper, we present a …
prediction of phenotype from high throughput experiments. In this paper, we present a …
[HTML][HTML] Deblender: a semi−/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples
Background Towards discovering robust cancer biomarkers, it is imperative to unravel the
cellular heterogeneity of patient samples and comprehend the interactions between cancer …
cellular heterogeneity of patient samples and comprehend the interactions between cancer …
Topologically inferring active miRNA‐mediated subpathways toward precise cancer classification by directed random walk
Z Ning, C Feng, C Song, W Liu, D Shang… - Molecular …, 2019 - Wiley Online Library
Accurate predictions of classification biomarkers and disease status are indispensable for
clinical cancer diagnosis and research. However, the robustness of conventional gene …
clinical cancer diagnosis and research. However, the robustness of conventional gene …
[图书][B] Computational methods for processing and analysis of biological pathways
This work offers a guided walkthrough of one of the most promising research areas in
modern life sciences, enabling a deeper understanding of involved concepts and …
modern life sciences, enabling a deeper understanding of involved concepts and …