What is principal component analysis?

M Ringnér - Nature biotechnology, 2008 - nature.com
What is principal component analysis? | Nature Biotechnology Skip to main content Thank
you for visiting nature.com. You are using a browser version with limited support for CSS. To …

Biology of gastrointestinal stromal tumors

CL Corless, JA Fletcher, MC Heinrich - Journal of Clinical Oncology, 2004 - ascopubs.org
Once a poorly defined pathologic oddity, in recent years, gastrointestinal stromal tumor
(GIST) has emerged as a distinct oncogenetic entity that is now center stage in clinical trials …

[HTML][HTML] Convolutional neural network models for cancer type prediction based on gene expression

M Mostavi, YC Chiu, Y Huang, Y Chen - BMC medical genomics, 2020 - Springer
Background Precise prediction of cancer types is vital for cancer diagnosis and therapy.
Through a predictive model, important cancer marker genes can be inferred. Several studies …

[HTML][HTML] Nuclear expression of STAT6 distinguishes solitary fibrous tumor from histologic mimics

LA Doyle, M Vivero, CDM Fletcher, F Mertens… - Modern …, 2014 - nature.com
Solitary fibrous tumor (SFT) is composed of spindled to ovoid cells in a patternless
architecture with prominent stromal collagen and hemangiopericytoma-like vessels. Some …

NCCN Task Force report: update on the management of patients with gastrointestinal stromal tumors

GD Demetri, M Von Mehren, CR Antonescu… - Journal of the National …, 2010 - jnccn.org
Background Gastrointestinal stromal tumors (GISTs) are the most common mesenchymal
tumors of the gastrointestinal tract. Neoplastic GIST cells seem to arise from a common …

Adjusting batch effects in microarray expression data using empirical Bayes methods

WE Johnson, C Li, A Rabinovic - Biostatistics, 2007 - academic.oup.com
Non-biological experimental variation or “batch effects" are commonly observed across
multiple batches of microarray experiments, often rendering the task of combining data from …

Repeated observation of breast tumor subtypes in independent gene expression data sets

T Sørlie, R Tibshirani, J Parker… - Proceedings of the …, 2003 - National Acad Sciences
Characteristic patterns of gene expression measured by DNA microarrays have been used
to classify tumors into clinically relevant subgroups. In this study, we have refined the …

Recurrent Fusion of TMPRSS2 and ETS Transcription Factor Genes in Prostate Cancer

SA Tomlins, DR Rhodes, S Perner, SM Dhanasekaran… - science, 2005 - science.org
Recurrent chromosomal rearrangements have not been well characterized in common
carcinomas. We used a bioinformatics approach to discover candidate oncogenic …

Revisiting the nystrom method for improved large-scale machine learning

A Gittens, M Mahoney - International Conference on …, 2013 - proceedings.mlr.press
We reconsider randomized algorithms for the low-rank approximation of SPSD matrices
such as Laplacian and kernel matrices that arise in data analysis and machine learning …

[HTML][HTML] Incidence of sarcoma histotypes and molecular subtypes in a prospective epidemiological study with central pathology review and molecular testing

F Ducimetière, A Lurkin, D Ranchère-Vince… - PloS one, 2011 - journals.plos.org
Background The exact overall incidence of sarcoma and sarcoma subtypes is not known.
The objective of the present population-based study was to determine this incidence in a …