Spatial and temporal signal processing and decision making by MAPK pathways
O Atay, JM Skotheim - Journal of Cell Biology, 2017 - rupress.org
Mitogen-activated protein kinase (MAPK) pathways are conserved from yeast to man and
regulate a variety of cellular processes, including proliferation and differentiation. Recent …
regulate a variety of cellular processes, including proliferation and differentiation. Recent …
Chemotropism and cell-cell fusion in fungi
MR Clark-Cotton, KC Jacobs… - … and Molecular Biology …, 2022 - Am Soc Microbiol
Fungi exhibit an enormous variety of morphologies, including yeast colonies, hyphal
mycelia, and elaborate fruiting bodies. This diversity arises through a combination of polar …
mycelia, and elaborate fruiting bodies. This diversity arises through a combination of polar …
Ratiometric GPCR signaling enables directional sensing in yeast
Accurate detection of extracellular chemical gradients is essential for many cellular
behaviors. Gradient sensing is challenging for small cells, which can experience little …
behaviors. Gradient sensing is challenging for small cells, which can experience little …
Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition
Cells make accurate decisions in the face of molecular noise and environmental fluctuations
by relying not only on present pathway activity, but also on their memory of past signaling …
by relying not only on present pathway activity, but also on their memory of past signaling …
Yeast GPCR signaling reflects the fraction of occupied receptors, not the number
According to receptor theory, the effect of a ligand depends on the amount of agonist–
receptor complex. Therefore, changes in receptor abundance should have quantitative …
receptor complex. Therefore, changes in receptor abundance should have quantitative …
Sensory input attenuation allows predictive sexual response in yeast
Animals are known to adjust their sexual behaviour depending on mate competition. Here
we report similar regulation for mating behaviour in a sexual unicellular eukaryote, the …
we report similar regulation for mating behaviour in a sexual unicellular eukaryote, the …
Parameter uncertainty quantification using surrogate models applied to a spatial model of yeast mating polarization
A common challenge in systems biology is quantifying the effects of unknown parameters
and estimating parameter values from data. For many systems, this task is computationally …
and estimating parameter values from data. For many systems, this task is computationally …
Testing the limits of gradient sensing
V Lakhani, TC Elston - PLoS computational biology, 2017 - journals.plos.org
The ability to detect a chemical gradient is fundamental to many cellular processes. In
multicellular organisms gradient sensing plays an important role in many physiological …
multicellular organisms gradient sensing plays an important role in many physiological …
Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves
F Sevlever, JP Di Bella, AC Ventura - PLOS Computational …, 2020 - journals.plos.org
Negative cooperativity is a phenomenon in which the binding of a first ligand or substrate
molecule decreases the rate of subsequent binding. This definition is not exclusive to ligand …
molecule decreases the rate of subsequent binding. This definition is not exclusive to ligand …
Modulation of transcription factor dynamics allows versatile information transmission
A Givré, A Colman-Lerner, S Ponce Dawson - Scientific Reports, 2023 - nature.com
Cells detect changes in their environment and generate responses, often involving changes
in gene expression. In this paper we use information theory and a simple transcription model …
in gene expression. In this paper we use information theory and a simple transcription model …