Spatial and temporal signal processing and decision making by MAPK pathways

O Atay, JM Skotheim - Journal of Cell Biology, 2017 - rupress.org
Mitogen-activated protein kinase (MAPK) pathways are conserved from yeast to man and
regulate a variety of cellular processes, including proliferation and differentiation. Recent …

Chemotropism and cell-cell fusion in fungi

MR Clark-Cotton, KC Jacobs… - … and Molecular Biology …, 2022 - Am Soc Microbiol
Fungi exhibit an enormous variety of morphologies, including yeast colonies, hyphal
mycelia, and elaborate fruiting bodies. This diversity arises through a combination of polar …

Ratiometric GPCR signaling enables directional sensing in yeast

NT Henderson, M Pablo, D Ghose… - PLoS …, 2019 - journals.plos.org
Accurate detection of extracellular chemical gradients is essential for many cellular
behaviors. Gradient sensing is challenging for small cells, which can experience little …

Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition

A Doncic, O Atay, E Valk, A Grande, A Bush, G Vasen… - Cell, 2015 - cell.com
Cells make accurate decisions in the face of molecular noise and environmental fluctuations
by relying not only on present pathway activity, but also on their memory of past signaling …

Yeast GPCR signaling reflects the fraction of occupied receptors, not the number

A Bush, G Vasen, A Constantinou… - Molecular systems …, 2016 - embopress.org
According to receptor theory, the effect of a ligand depends on the amount of agonist–
receptor complex. Therefore, changes in receptor abundance should have quantitative …

Sensory input attenuation allows predictive sexual response in yeast

A Banderas, M Koltai, A Anders, V Sourjik - Nature communications, 2016 - nature.com
Animals are known to adjust their sexual behaviour depending on mate competition. Here
we report similar regulation for mating behaviour in a sexual unicellular eukaryote, the …

Parameter uncertainty quantification using surrogate models applied to a spatial model of yeast mating polarization

M Renardy, TM Yi, D Xiu, CS Chou - PLoS computational biology, 2018 - journals.plos.org
A common challenge in systems biology is quantifying the effects of unknown parameters
and estimating parameter values from data. For many systems, this task is computationally …

Testing the limits of gradient sensing

V Lakhani, TC Elston - PLoS computational biology, 2017 - journals.plos.org
The ability to detect a chemical gradient is fundamental to many cellular processes. In
multicellular organisms gradient sensing plays an important role in many physiological …

Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves

F Sevlever, JP Di Bella, AC Ventura - PLOS Computational …, 2020 - journals.plos.org
Negative cooperativity is a phenomenon in which the binding of a first ligand or substrate
molecule decreases the rate of subsequent binding. This definition is not exclusive to ligand …

Modulation of transcription factor dynamics allows versatile information transmission

A Givré, A Colman-Lerner, S Ponce Dawson - Scientific Reports, 2023 - nature.com
Cells detect changes in their environment and generate responses, often involving changes
in gene expression. In this paper we use information theory and a simple transcription model …