Computational modeling of realistic cell membranes

SJ Marrink, V Corradi, PCT Souza, HI Ingolfsson… - Chemical …, 2019 - ACS Publications
Cell membranes contain a large variety of lipid types and are crowded with proteins,
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …

RNA transcription modulates phase transition-driven nuclear body assembly

J Berry, SC Weber, N Vaidya… - Proceedings of the …, 2015 - National Acad Sciences
Nuclear bodies are RNA and protein-rich, membraneless organelles that play important
roles in gene regulation. The largest and most well-known nuclear body is the nucleolus, an …

Phase behavior and morphology of multicomponent liquid mixtures

S Mao, D Kuldinow, MP Haataja, A Košmrlj - Soft Matter, 2019 - pubs.rsc.org
Multicomponent systems are ubiquitous in nature and industry. While the physics of few-
component liquid mixtures (ie, binary and ternary ones) is well-understood and routinely …

Transbilayer colocalization of lipid domains explained via measurement of strong coupling parameters

MC Blosser, AR Honerkamp-Smith, T Han, M Haataja… - Biophysical journal, 2015 - cell.com
When micron-scale compositional heterogeneity develops in membranes, the distribution of
lipids on one face of the membrane strongly affects the distribution on the other. Specifically …

Cholesterol flip-flop impacts domain registration in plasma membrane models

S Thallmair, HI Ingólfsson… - The journal of physical …, 2018 - ACS Publications
The plasma membrane is a highly complex multicomponent system that is central to the
functioning of cells. Cholesterol, a key lipid component of the plasma membrane, promotes …

Fluctuating hydrodynamics of multicomponent membranes with embedded proteins

BA Camley, FLH Brown - The Journal of chemical physics, 2014 - pubs.aip.org
A simulation method for the dynamics of inhomogeneous lipid bilayer membranes is
presented. The membrane is treated using stochastic Saffman-Delbrück hydrodynamics …

Diffusion coefficients in leaflets of bilayer membranes

K Seki, S Mogre, S Komura - Physical Review E, 2014 - APS
We study diffusion coefficients of liquid domains by explicitly taking into account the two-
layered structure called leaflets of the bilayer membrane. In general, the velocity fields …

Kinetics of domain registration in multicomponent lipid bilayer membranes

K Sornbundit, C Modchang, W Triampo, D Triampo… - Soft matter, 2014 - pubs.rsc.org
The kinetics of registration of lipid domains in the apposing leaflets of symmetric bilayer
membranes is investigated via systematic dissipative particle dynamics simulations. The …

Hydrodynamic interaction between overlapping domains during recurrence of registration within planar lipid bilayer membranes

T Han, TP Bailey, M Haataja - Physical Review E, 2014 - APS
Due to a thermodynamic coupling between the two leaflets comprising a lipid bilayer,
compositional lipid domains residing within opposing leaflets are often found in registry. If …

Analytical and computational studies of compositional lipid microdomains in bilayer membranes

T Han - 2015 - search.proquest.com
In this dissertation, we both analytically and computationally investigate several dynamic
problems related to compositional lipid microdomains in model bilayer membranes. We …