glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling

ME Brooks, K Kristensen, KJ Van Benthem… - The R …, 2017 - research-collection.ethz.ch
Count data can be analyzed using generalized linear mixed models when observations are
correlated in ways that require random effects. However, count data are often zero-inflated …

runjags: An R package providing interface utilities, model templates, parallel computing methods and additional distributions for MCMC models in JAGS

MJ Denwood - Journal of statistical software, 2016 - jstatsoft.org
The runjags package provides a set of interface functions to facilitate running Markov chain
Monte Carlo models in JAGS from within R. Automated calculation of appropriate …

The applications of model-based geostatistics in helminth epidemiology and control

RJS Magalhães, ACA Clements, AP Patil… - Advances in …, 2011 - Elsevier
Funding agencies are dedicating substantial resources to tackle helminth infections.
Reliable maps of the distribution of helminth infection can assist these efforts by targeting …

[HTML][HTML] A statistical framework for calculating prospective sample sizes and classifying efficacy results for faecal egg count reduction tests in ruminants, horses and …

MJ Denwood, RM Kaplan, IJ McKendrick… - Veterinary …, 2023 - Elsevier
The faecal egg count reduction test (FECRT) is the primary diagnostic tool used for detecting
anthelmintic resistance at the farm level. It is therefore extremely important that the …

Bayesian geostatistical modelling for mapping schistosomiasis transmission

P Vounatsou, G Raso, M Tanner, EK N'goran… - Parasitology, 2009 - cambridge.org
Progress has been made in mapping and predicting the risk of schistosomiasis using
Bayesian geostatistical inference. Applications primarily focused on risk profiling of …

Frequency distribution of Echinococcus multilocularis and other helminths of foxes in Kyrgyzstan

I Ziadinov, P Deplazes, A Mathis, B Mutunova… - Veterinary …, 2010 - Elsevier
Echinococcosis is a major emerging zoonosis in central Asia. A study of the helminth fauna
of foxes from Naryn Oblast in central Kyrgyzstan was undertaken to investigate the …

Effects of anthropogenic disturbance and climate on patterns of bat fly parasitism

S Pilosof, CW Dick, C Korine, BD Patterson… - PloS one, 2012 - journals.plos.org
Environmental conditions, including anthropogenic disturbance, can significantly alter host
and parasite communities. Yet, our current knowledge is based mainly on endoparasites …

The effectiveness of faecal removal methods of pasture management to control the cyathostomin burden of donkeys

CJ Corbett, S Love, A Moore, FA Burden… - Parasites & …, 2014 - Springer
Background The level of anthelmintic resistance within some cyathostomin parasite
populations has increased to the level where sole reliance on anthelmintic-based control …

[HTML][HTML] Field evaluation of anticoccidial efficacy: a novel approach demonstrates reduced efficacy of toltrazuril against ovine Eimeria spp. in Norway

A Odden, MJ Denwood, S Stuen, LJ Robertson… - International Journal for …, 2018 - Elsevier
Ovine Eimeria spp. infections cause reduced welfare, increased mortality, and substantial
economic losses, and anticoccidials are crucial for their control. Recent reports of toltrazuril …

[HTML][HTML] Zero-inflated hierarchical models for faecal egg counts to assess anthelmintic efficacy

C Wang, PR Torgerson, J Höglund, R Furrer - Veterinary parasitology, 2017 - Elsevier
The prevalence of anthelmintic resistance has increased in recent years, as a result of the
extensive use of anthelmintic drugs to reduce the infection of parasitic worms in livestock. In …