CAFE: a software suite for analysis of paired-sample transposon insertion sequencing data

A Abramova, A Osińska, H Kunche, E Burman… - …, 2021 - academic.oup.com
Sequencing of transposon insertion libraries is used to determine the relative fitness of
individual mutants at a large scale. However, there is a lack of tools for specifically analyzing …

PIMMS (Pragmatic Insertional Mutation Mapping System) Laboratory Methodology a Readily Accessible Tool for Identification of Essential Genes in Streptococcus

AM Blanchard, SA Egan, RD Emes, A Warry… - Frontiers in …, 2016 - frontiersin.org
The Pragmatic Insertional Mutation Mapping (PIMMS) laboratory protocol was developed
alongside various bioinformatics packages to enable detection of essential and conditionally …

PIMMS-Dash: Accessible analysis, interrogation, and visualisation of high-throughput transposon insertion sequencing (TIS) data

AM Blanchard, A Taylor, A Warry, F Shephard… - bioRxiv, 2024 - biorxiv.org
Motivation: Current methods for visualising and interrogating high-throughput transposon
insertion mutagenesis sequencing (TIS) data requires a significant time investment in …

Using Genome Scale Mutant Libraries to Identify Essential Genes

KS Myers, P Behari Lal, DR Noguera… - Essential Genes and …, 2022 - Springer
Identification of essential genes is key to understanding the required processes and gene
products of organisms under one or more conditions. Transposon sequencing (Tn-seq) has …

[PDF][PDF] Identification of potential therapeutic targets for Streptococcus suis infection

B Jeffreys - 2021 - core.ac.uk
Streptococcus (S.) suis is a commensal porcine pathogen that is the leading causative agent
of bacterial meningitis and sepsis in young pigs globally. Systemic infection in swine is …

[PDF][PDF] Analyse, clonage et transplantation du génome de la bactérie Mesoplasma florum

V Baby - 2017 - savoirs.usherbrooke.ca
Grâce aux progrès de la synthèse et de l'assemblage d'ADN, il est maintenant possible de
créer des génomes complètement différents de ceux retrouvés dans la nature. Il sera bientôt …

New Genomics Tools and Strategies for Studying Antibiotics and Antibiotic-Resistance in Staphylococcus Aureus

MJ Santiago - 2016 - dash.harvard.edu
Staphylococcus aureus is a gram positive coccoid pathogen that causes intractable
infections in hospitals and communities around the world, and tens of thousands of people …

[引用][C] Characterization of the effects of'old'nitrofuran antibiotics on Gram-negative bacteria: Master of Science (Microbiology), Massey University, Manawatu, New …

RSD Joseph - 2022 - Massey University