Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
[HTML][HTML] ITS alchemy: on the use of ITS as a DNA marker in fungal ecology
H Kauserud - Fungal Ecology, 2023 - Elsevier
High throughput sequencing of PCR amplicons derived from environmental DNA (aka DNA
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
metabarcoding) has become an integral part of fungal ecology, enabling in-depth …
[HTML][HTML] Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi
Alternative solutions to mineral fertilizers and pesticides that reduce the environmental
impact of agriculture are urgently needed. Arbuscular mycorrhizal fungi (AMF) can enhance …
impact of agriculture are urgently needed. Arbuscular mycorrhizal fungi (AMF) can enhance …
Global patterns in endemicity and vulnerability of soil fungi
Fungi are highly diverse organisms, which provide multiple ecosystem services. However,
compared with charismatic animals and plants, the distribution patterns and conservation …
compared with charismatic animals and plants, the distribution patterns and conservation …
The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
Fungi are highly important biotic components of terrestrial ecosystems, but we still have a
very limited understanding about their diversity and distribution. This data article releases a …
very limited understanding about their diversity and distribution. This data article releases a …
[HTML][HTML] Current concepts, advances, and challenges in deciphering the human microbiota with metatranscriptomics
T Ojala, AE Häkkinen, E Kankuri, M Kankainen - Trends in Genetics, 2023 - cell.com
Metatranscriptomics refers to the analysis of the collective microbial transcriptome of a
sample. Its increased utilization for the characterization of human-associated microbial …
sample. Its increased utilization for the characterization of human-associated microbial …
Africa: sequence 100,000 species to safeguard biodiversity
Africa: sequence 100,000 species to safeguard biodiversity Skip to main content Thank you for
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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2023 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
[HTML][HTML] Potential of meta-omics to provide modern microbial indicators for monitoring soil quality and securing food production
Soils are fundamental resources for agricultural production and play an essential role in
food security. They represent the keystone of the food value chain because they harbor a …
food security. They represent the keystone of the food value chain because they harbor a …
[HTML][HTML] High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives
MM Nizamani, Q Zhang, G Muhae-Ud-Din… - Phytopathology …, 2023 - Springer
High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology,
showcasing its transformative role in the management of plant diseases. As a powerful tool …
showcasing its transformative role in the management of plant diseases. As a powerful tool …