[HTML][HTML] Integration strategies of multi-omics data for machine learning analysis

M Picard, MP Scott-Boyer, A Bodein, O Périn… - Computational and …, 2021 - Elsevier
Increased availability of high-throughput technologies has generated an ever-growing
number of omics data that seek to portray many different but complementary biological …

Cancer immunotherapy: it's time to better predict patients' response

C Pilard, M Ancion, P Delvenne, G Jerusalem… - British journal of …, 2021 - nature.com
In less than a decade, half a dozen immune checkpoint inhibitors have been approved and
are currently revolutionising the treatment of many cancer (sub) types. With the clinical …

A systematic review on biomarker identification for cancer diagnosis and prognosis in multi-omics: from computational needs to machine learning and deep learning

A Dhillon, A Singh, VK Bhalla - Archives of Computational Methods in …, 2023 - Springer
Biomarkers, also known as biological markers, are substances like transcripts,
deoxyribonucleic acid (DNA), genes, proteins, and metabolites that indicate whether a …

Genome-wide association study of bladder cancer reveals new biological and translational insights

S Koutros, LA Kiemeney, PP Choudhury, RL Milne… - European urology, 2023 - Elsevier
Background Genomic regions identified by genome-wide association studies (GWAS) for
bladder cancer risk provide new insights into etiology. Objective To identify new …

Multi-omics analysis: Paving the path toward achieving precision medicine in cancer treatment and immuno-oncology

V Raufaste-Cazavieille, R Santiago… - Frontiers in Molecular …, 2022 - frontiersin.org
The acceleration of large-scale sequencing and the progress in high-throughput
computational analyses, defined as omics, was a hallmark for the comprehension of the …

Deletions on 9p21 are associated with worse outcomes after anti-PD-1/PD-L1 monotherapy but not chemoimmunotherapy

EM Ebot, DL Duncan, K Tolba, D Fabrizio… - NPJ Precision …, 2022 - nature.com
NCCN guidelines for first-line treatment of advanced non-squamous non-small-cell lung
cancer (NSCLC) patients without targetable driver alterations includes either …

[HTML][HTML] Multi‐omics consensus ensemble refines the classification of muscle‐invasive bladder cancer with stratified prognosis, tumour microenvironment and distinct …

X Lu, J Meng, L Su, L Jiang, H Wang, J Zhu… - Clinical and …, 2021 - ncbi.nlm.nih.gov
Dear Editor, The molecular classification of muscle-invasive bladder cancer (MIBC) based
on transcriptomic signatures has been extensively studied. 1–4 The complementary nature …

Co-expression of cancer-testis antigens of MAGE-A6 and MAGE-A11 is associated with tumor aggressiveness in patients with bladder cancer

M Mohsenzadegan, M Razmi, S Vafaei… - Scientific reports, 2022 - nature.com
Melanoma antigen gene (MAGE)-A6 and MAGE-A11 are two of the most cancer-testis
antigens overexpressed in various types of cancers. However, the clinical and prognosis …

MicroRNAs as regulators of immune checkpoints in cancer immunotherapy: targeting PD-1/PD-L1 and CTLA-4 pathways

A Zabeti Touchaei, S Vahidi - Cancer Cell International, 2024 - Springer
Immunotherapy has revolutionized cancer treatment by harnessing the power of the immune
system to eliminate tumors. Immune checkpoint inhibitors (ICIs) block negative regulatory …

Integrating temporal single-cell gene expression modalities for trajectory inference and disease prediction

JS Ranek, N Stanley, JE Purvis - Genome Biology, 2022 - Springer
Background Current methods for analyzing single-cell datasets have relied primarily on
static gene expression measurements to characterize the molecular state of individual cells …