[HTML][HTML] Phat–persistent homology algorithms toolbox

U Bauer, M Kerber, J Reininghaus, H Wagner - Journal of symbolic …, 2017 - Elsevier
Phat is an open-source C++ library for the computation of persistent homology by matrix
reduction, targeted towards developers of software for topological data analysis. We aim for …

Skeletonization and partitioning of digital images using discrete morse theory

O Delgado-Friedrichs, V Robins… - IEEE transactions on …, 2014 - ieeexplore.ieee.org
We show how discrete Morse theory provides a rigorous and unifying foundation for defining
skeletons and partitions of grayscale digital images. We model a grayscale image as a …

Characterizing molecular interactions in chemical systems

D Günther, RA Boto, J Contreras-Garcia… - IEEE transactions on …, 2014 - ieeexplore.ieee.org
Interactions between atoms have a major influence on the chemical properties of molecular
systems. While covalent interactions impose the structural integrity of molecules …

Clear and compress: Computing persistent homology in chunks

U Bauer, M Kerber, J Reininghaus - … in Data Analysis and Visualization III …, 2014 - Springer
We present a parallel algorithm for computing the persistent homology of a filtered chain
complex. Our approach differs from the commonly used reduction algorithm by first …

Morse complexes for shape segmentation and homological analysis: discrete models and algorithms

L De Floriani, U Fugacci, F Iuricich… - Computer graphics …, 2015 - Wiley Online Library
Morse theory offers a natural and mathematically‐sound tool for shape analysis and
understanding. It allows studying the behavior of a scalar function defined on a manifold …

An entropy-based persistence barcode

H Chintakunta, T Gentimis, R Gonzalez-Diaz… - Pattern Recognition, 2015 - Elsevier
In persistent homology, the persistence barcode encodes pairs of simplices meaning birth
and death of homology classes. Persistence barcodes depend on the ordering of the …

Topological data analysis: concepts, computation, and applications in chemical engineering

AD Smith, P Dłotko, VM Zavala - Computers & Chemical Engineering, 2021 - Elsevier
A primary hypothesis that drives scientific and engineering studies is that data has structure.
The dominant paradigms for describing such structure are statistics (eg, moments …

Discrete morse sandwich: Fast computation of persistence diagrams for scalar data–an algorithm and a benchmark

P Guillou, J Vidal, J Tierny - IEEE Transactions on Visualization …, 2023 - ieeexplore.ieee.org
This paper introduces an efficient algorithm for persistence diagram computation, given an
input piecewise linear scalar field defined on a-dimensional simplicial complex, with. Our …

Relational persistent homology for multispecies data with application to the tumor microenvironment

BJ Stolz, J Dhesi, JA Bull, HA Harrington… - Bulletin of Mathematical …, 2024 - Springer
Topological data analysis (TDA) is an active field of mathematics for quantifying shape in
complex data. Standard methods in TDA such as persistent homology (PH) are typically …

Pore-network extraction using discrete Morse theory: Preserving the topology of the pore space

AS Zubov, DA Murygin, KM Gerke - Physical Review E, 2022 - APS
Pore-scale modeling based on the 3D structural information of porous materials has
enormous potential in assessing physical properties beyond the capabilities of laboratory …