[HTML][HTML] Phat–persistent homology algorithms toolbox
Phat is an open-source C++ library for the computation of persistent homology by matrix
reduction, targeted towards developers of software for topological data analysis. We aim for …
reduction, targeted towards developers of software for topological data analysis. We aim for …
Skeletonization and partitioning of digital images using discrete morse theory
O Delgado-Friedrichs, V Robins… - IEEE transactions on …, 2014 - ieeexplore.ieee.org
We show how discrete Morse theory provides a rigorous and unifying foundation for defining
skeletons and partitions of grayscale digital images. We model a grayscale image as a …
skeletons and partitions of grayscale digital images. We model a grayscale image as a …
Characterizing molecular interactions in chemical systems
Interactions between atoms have a major influence on the chemical properties of molecular
systems. While covalent interactions impose the structural integrity of molecules …
systems. While covalent interactions impose the structural integrity of molecules …
Clear and compress: Computing persistent homology in chunks
We present a parallel algorithm for computing the persistent homology of a filtered chain
complex. Our approach differs from the commonly used reduction algorithm by first …
complex. Our approach differs from the commonly used reduction algorithm by first …
Morse complexes for shape segmentation and homological analysis: discrete models and algorithms
L De Floriani, U Fugacci, F Iuricich… - Computer graphics …, 2015 - Wiley Online Library
Morse theory offers a natural and mathematically‐sound tool for shape analysis and
understanding. It allows studying the behavior of a scalar function defined on a manifold …
understanding. It allows studying the behavior of a scalar function defined on a manifold …
An entropy-based persistence barcode
In persistent homology, the persistence barcode encodes pairs of simplices meaning birth
and death of homology classes. Persistence barcodes depend on the ordering of the …
and death of homology classes. Persistence barcodes depend on the ordering of the …
Topological data analysis: concepts, computation, and applications in chemical engineering
A primary hypothesis that drives scientific and engineering studies is that data has structure.
The dominant paradigms for describing such structure are statistics (eg, moments …
The dominant paradigms for describing such structure are statistics (eg, moments …
Discrete morse sandwich: Fast computation of persistence diagrams for scalar data–an algorithm and a benchmark
P Guillou, J Vidal, J Tierny - IEEE Transactions on Visualization …, 2023 - ieeexplore.ieee.org
This paper introduces an efficient algorithm for persistence diagram computation, given an
input piecewise linear scalar field defined on a-dimensional simplicial complex, with. Our …
input piecewise linear scalar field defined on a-dimensional simplicial complex, with. Our …
Relational persistent homology for multispecies data with application to the tumor microenvironment
Topological data analysis (TDA) is an active field of mathematics for quantifying shape in
complex data. Standard methods in TDA such as persistent homology (PH) are typically …
complex data. Standard methods in TDA such as persistent homology (PH) are typically …
Pore-network extraction using discrete Morse theory: Preserving the topology of the pore space
AS Zubov, DA Murygin, KM Gerke - Physical Review E, 2022 - APS
Pore-scale modeling based on the 3D structural information of porous materials has
enormous potential in assessing physical properties beyond the capabilities of laboratory …
enormous potential in assessing physical properties beyond the capabilities of laboratory …