Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish
Fish gut microbiome confers various effects to the host fish; this includes overall size,
metabolism, feeding behaviour and immune response in the fish. The emergence of …
metabolism, feeding behaviour and immune response in the fish. The emergence of …
Microbial biodiversity and bioremediation assessment through omics approaches
H Chandran, M Meena, K Sharma - Frontiers in Environmental …, 2020 - frontiersin.org
Industrialization, population burst, and changing lifestyles have resulted in the genesis of
non-degradable pollutants languishing the environment and human health. Biological …
non-degradable pollutants languishing the environment and human health. Biological …
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
KL Kalantar, T Carvalho, CFA de Bourcy… - …, 2020 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) has enabled the rapid,
unbiased detection and identification of microbes without pathogen-specific reagents …
unbiased detection and identification of microbes without pathogen-specific reagents …
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults
C Langelier, KL Kalantar, F Moazed… - Proceedings of the …, 2018 - National Acad Sciences
Lower respiratory tract infections (LRTIs) lead to more deaths each year than any other
infectious disease category. Despite this, etiologic LRTI pathogens are infrequently …
infectious disease category. Despite this, etiologic LRTI pathogens are infrequently …
An introduction to the analysis of shotgun metagenomic data
TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …
and clarified the relationship between host-associated microbial communities and host …
Drivers, dynamics, and control of emerging vector-borne zoonotic diseases
AM Kilpatrick, SE Randolph - The Lancet, 2012 - thelancet.com
Emerging vector-borne diseases are an important issue in global health. Many vector-borne
pathogens have appeared in new regions in the past two decades, while many endemic …
pathogens have appeared in new regions in the past two decades, while many endemic …
African swine fever virus replication and genomics
African swine fever virus (ASFV) is a large icosahedral DNA virus which replicates
predominantly in the cytoplasm of infected cells. The ASFV double-stranded DNA genome …
predominantly in the cytoplasm of infected cells. The ASFV double-stranded DNA genome …
FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences
J Quan, C Langelier, A Kuchta, J Batson… - Nucleic acids …, 2019 - academic.oup.com
The growing prevalence of deadly microbes with resistance to previously life-saving drug
therapies is a dire threat to human health. Detection of low abundance pathogen sequences …
therapies is a dire threat to human health. Detection of low abundance pathogen sequences …
The bovine milk microbiota: insights and perspectives from-omics studies
Recent significant progress in culture-independent techniques, together with the parallel
development of-omics technologies and data analysis capabilities, have led to a new …
development of-omics technologies and data analysis capabilities, have led to a new …
Going viral: next-generation sequencing applied to phage populations in the human gut
Over the past decade, researchers have begun to characterize viral diversity using
metagenomic methods. These studies have shown that viruses, the majority of which infect …
metagenomic methods. These studies have shown that viruses, the majority of which infect …