The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology

TE Sandberg, MJ Salazar, LL Weng, BO Palsson… - Metabolic …, 2019 - Elsevier
Harnessing the process of natural selection to obtain and understand new microbial
phenotypes has become increasingly possible due to advances in culturing techniques …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - Am Soc Microbiol
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

The dynamics of molecular evolution over 60,000 generations

BH Good, MJ McDonald, JE Barrick, RE Lenski… - Nature, 2017 - nature.com
The outcomes of evolution are determined by a stochastic dynamical process that governs
how mutations arise and spread through a population. However, it is difficult to observe …

Tempo and mode of genome evolution in a 50,000-generation experiment

O Tenaillon, JE Barrick, N Ribeck, DE Deatherage… - Nature, 2016 - nature.com
Adaptation by natural selection depends on the rates, effects and interactions of many
mutations, making it difficult to determine what proportion of mutations in an evolving lineage …

Sugar synthesis from CO2 in Escherichia coli

N Antonovsky, S Gleizer, E Noor, Y Zohar, E Herz… - Cell, 2016 - cell.com
Can a heterotrophic organism be evolved to synthesize biomass from CO 2 directly? So far,
non-native carbon fixation in which biomass precursors are synthesized solely from CO 2 …

Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER

BG Wong, CP Mancuso, S Kiriakov, CJ Bashor… - Nature …, 2018 - nature.com
Precise control over microbial cell growth conditions could enable detection of minute
phenotypic changes, which would improve our understanding of how genotypes are shaped …

Evolutionary game theory using agent-based methods

C Adami, J Schossau, A Hintze - Physics of life reviews, 2016 - Elsevier
Evolutionary game theory is a successful mathematical framework geared towards
understanding the selective pressures that affect the evolution of the strategies of agents …

Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations

RE Lenski - The ISME journal, 2017 - academic.oup.com
Evolution is an on-going process, and it can be studied experimentally in organisms with
rapid generations. My team has maintained 12 populations of Escherichia coli in a simple …

Experimental evolution in biofilm populations

HP Steenackers, I Parijs, KR Foster… - FEMS microbiology …, 2016 - academic.oup.com
Biofilms are a major form of microbial life in which cells form dense surface associated
communities that can persist for many generations. The long-life of biofilm communities …

Fibroblasts and alectinib switch the evolutionary games played by non-small cell lung cancer

A Kaznatcheev, J Peacock, D Basanta… - Nature ecology & …, 2019 - nature.com
Heterogeneity in strategies for survival and proliferation among the cells that constitute a
tumour is a driving force behind the evolution of resistance to cancer therapy. The rules …