Mining museums for historical DNA: advances and challenges in museomics

CJ Raxworthy, BT Smith - Trends in Ecology & Evolution, 2021 - cell.com
Historical DNA (hDNA), obtained from museum and herbarium specimens, has yielded
spectacular new insights into the history of organisms. This includes documenting historical …

The Genome 10K Project: a way forward

KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …

Global sea turtle conservation successes

AD Mazaris, G Schofield, C Gkazinou… - Science …, 2017 - science.org
We document a tendency for published estimates of population size in sea turtles to be
increasing rather than decreasing across the globe. To examine the population status of the …

The broiler chicken as a signal of a human reconfigured biosphere

CE Bennett, R Thomas, M Williams… - Royal Society …, 2018 - royalsocietypublishing.org
Changing patterns of human resource use and food consumption have profoundly impacted
the Earth's biosphere. Until now, no individual taxa have been suggested as distinct and …

On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?

O Mazet, W Rodríguez, S Grusea, S Boitard, L Chikhi - Heredity, 2016 - nature.com
Most species are structured and influenced by processes that either increased or reduced
gene flow between populations. However, most population genetic inference methods …

Using genomic data to infer historic population dynamics of nonmodel organisms

AC Beichman, E Huerta-Sanchez… - Annual Review of …, 2018 - annualreviews.org
Genome sequence data are now being routinely obtained from many nonmodel organisms.
These data contain a wealth of information about the demographic history of the populations …

[PDF][PDF] MSMC and MSMC2: the multiple sequentially markovian coalescent

S Schiffels, K Wang - Statistical population genomics, 2020 - library.oapen.org
Abstract The Multiple Sequentially Markovian Coalescent (MSMC) is a population genetic
method and software for inferring demographic history and population structure through time …

Quantifying temporal genomic erosion in endangered species

D Díez-del-Molino, F Sánchez-Barreiro, I Barnes… - Trends in Ecology & …, 2018 - cell.com
Many species have undergone dramatic population size declines over the past centuries.
Although stochastic genetic processes during and after such declines are thought to elevate …

The use of museum specimens with high-throughput DNA sequencers

AS Burrell, TR Disotell, CM Bergey - Journal of human evolution, 2015 - Elsevier
Natural history collections have long been used by morphologists, anatomists, and
taxonomists to probe the evolutionary process and describe biological diversity. These …

The impact of purifying and background selection on the inference of population history: problems and prospects

P Johri, K Riall, H Becher, L Excoffier… - Molecular biology …, 2021 - academic.oup.com
Current procedures for inferring population history generally assume complete neutrality—
that is, they neglect both direct selection and the effects of selection on linked sites. We here …