Applications and trends of machine learning in genomics and phenomics for next-generation breeding

S Esposito, D Carputo, T Cardi, P Tripodi - Plants, 2019 - mdpi.com
Crops are the major source of food supply and raw materials for the processing industry. A
balance between crop production and food consumption is continually threatened by plant …

Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs

SL Dwivedi, LF Quiroz, ASN Reddy, C Spillane… - International Journal of …, 2023 - mdpi.com
Alternative splicing (AS) is a gene regulatory mechanism modulating gene expression in
multiple ways. AS is prevalent in all eukaryotes including plants. AS generates two or more …

Full-length sequencing of ginkgo transcriptomes for an in-depth understanding of flavonoid and terpenoid trilactone biosynthesis

S Sun, Y Li, L Chu, X Kuang, J Song, C Sun - Gene, 2020 - Elsevier
Ginkgo biloba L. is regarded as the most ancient living tree, and its kernel has been used as
a traditional Chinese medicine for more than 2,000 years. The leaf extracts of this tree have …

Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogen

R Bedre, S Irigoyen, PDC Schaker… - Scientific Reports, 2019 - nature.com
Alternative splicing (AS) promotes transcriptome and proteome diversity during growth,
development, and stress responses in eukaryotes. Genome-wide studies of AS in sugarcane …

A resource of identified and annotated lincRNAs expressed during somatic embryogenesis development in Norway spruce

C Canovi, K Stojkovič, AA Benítez… - Physiologia …, 2024 - Wiley Online Library
Long non‐coding RNAs (lncRNAs) have emerged as important regulators of many
biological processes, although their regulatory roles remain poorly characterized in woody …

Xylem Transcriptome Analysis in Contrasting Wood Phenotypes of Eucalyptus urophylla × tereticornis Hybrids

X Zhu, J He, C Zhou, Q Weng, S Chen, D Bush, F Li - Forests, 2022 - mdpi.com
An investigation of the effects of two important post-transcriptional regulatory mechanisms,
gene transcription and alternative splicing (AS), on the wood formation of Eucalyptus …

Structural characterization of the DRF1 gene of Aegilops speltoides and comparison of its sequence with those of B and other Triticeae genomes

K Thiyagarajan, A Latini, C Cantale, P Galeffi - Euphytica, 2020 - Springer
The genus Aegilops L. has been intensively investigated due to its close relationship with
wheat (Triticum L.) as contributor of B and D subgenomes. Because of their vast genetic …

HTSQualC is a flexible and one-step quality control software for high-throughput sequencing data analysis

R Bedre, C Avila, K Mandadi - Scientific Reports, 2021 - nature.com
Use of high-throughput sequencing (HTS) has become indispensable in life science
research. Raw HTS data contains several sequencing artifacts, and as a first step it is …

Relevance of Bioinformatics and Database in Omics Study

R Shankar, V Dwivedi, GC Arya - … and Global Food Security Volume 1, 2021 - Springer
Bioinformatics is an interdisciplinary branch of biological sciences that assists biologists to
interpret and extract the biological information from the omics data. The biological …

Suppression of Hotair Gene in Small-Cell Lung Cancer Effect The Differentially Expressed Genes and Inhibit Progression of the Disease

T Manaharan, VM Achari, NRBBN Ahmad… - Current Trends in …, 2024 - abap.co.in
HOTAIR gene is a long non-coding RNA (lncRNA) that regulates the differentially expressed
genes causing intermediate malignant respiratory disorders like small-cell lung carcinoma …