Whole-genome sequencing surveillance and machine learning of the electronic health record for enhanced healthcare outbreak detection

AJ Sundermann, J Chen, P Kumar… - Clinical Infectious …, 2022 - academic.oup.com
Background Most hospitals use traditional infection prevention (IP) methods for outbreak
detection. We developed the Enhanced Detection System for Healthcare-Associated …

Whole-genome sequencing surveillance and machine learning for healthcare outbreak detection and investigation: a systematic review and summary

AJ Sundermann, J Chen, JK Miller… - Antimicrobial …, 2022 - cambridge.org
Background: Whole-genome sequencing (WGS) has traditionally been used in infection
prevention to confirm or refute the presence of an outbreak after it has occurred. Due to …

NGSocomial Infections: High-resolution views of hospital-acquired infections through genomic epidemiology

AL Greninger, DM Zerr - Journal of the Pediatric Infectious …, 2021 - academic.oup.com
Hospital outbreak investigations are high-stakes epidemiology. Contacts between staff and
patients are numerous; environmental and community exposures are plentiful; and patients …

Economic and health impact modelling of a whole genome sequencing-led intervention strategy for bacterial healthcare-associated infections for England and for the …

JM Fox, NJ Saunders, SH Jerwood - Microbial Genomics, 2023 - microbiologyresearch.org
Bacterial healthcare-associated infections (HAIs) are a substantial source of global morbidity
and mortality. The estimated cost associated with HAIs ranges from 35to 45 billion in the …

The impact of genomics on precision public health: beyond the pandemic

MJ Khoury, KE Holt - Genome medicine, 2021 - Springer
Precision public health has been defined in many ways [1]. It can be viewed as an emerging
multidisciplinary field that uses genomics, big data, and machine learning/artificial …

Unsuspected Clonal Spread of Methicillin-Resistant Staphylococcus aureus Causing Bloodstream Infections in Hospitalized Adults Detected Using Whole Genome …

BM Talbot, NF Jacko, RA Petit III… - Clinical Infectious …, 2022 - academic.oup.com
Background Though detection of transmission clusters of methicillin-resistant
Staphylococcus aureus (MRSA) infections is a priority for infection control personnel in …

Staphylococcus brunensis sp. nov. isolated from human clinical specimens with a staphylococcal cassette chromosome-related genomic island outside of the rlmH gene …

V Kovařovic, A Finstrlová, I Sedláček… - Microbiology …, 2023 - Am Soc Microbiol
Novel species of coagulase-negative staphylococci, which could serve as reservoirs of
virulence and antimicrobial resistance factors for opportunistic pathogens from the genus …

Novel cassette chromosome recombinases CcrA8B9 catalyse the excision and integration of the staphylococcal cassette chromosome mec element

J Xiao, J Huang, X Xue, C Wang, Y Sun… - Journal of …, 2023 - academic.oup.com
Objectives A defining feature of MRSA is the SCC mec element. The excision and
integration of SCC mec elements are catalysed by Ccr recombinases. Currently, seven ccrA …

Everybody nose: molecular and clinical characteristics of nasal colonization during active methicillin-resistant Staphylococcus aureus bloodstream infection

E Reategui Schwarz, A van de Guchte… - BMC Infectious …, 2022 - Springer
Background Healthcare-associated infections pose a potentially fatal threat to patients
worldwide and Staphylococcus aureus is one of the most common causes of healthcare …

Whole Genome Sequencing Applications in Hospital Epidemiology and Infection Prevention

M Doll, AL Bryson, TN Palmore - Current Infectious Disease Reports, 2024 - Springer
Abstract Purpose of Review Whole genome sequencing is increasingly used in
epidemiologic surveillance in healthcare centers, shedding new light on the transmission of …