Whole-genome sequencing surveillance and machine learning of the electronic health record for enhanced healthcare outbreak detection
Background Most hospitals use traditional infection prevention (IP) methods for outbreak
detection. We developed the Enhanced Detection System for Healthcare-Associated …
detection. We developed the Enhanced Detection System for Healthcare-Associated …
Whole-genome sequencing surveillance and machine learning for healthcare outbreak detection and investigation: a systematic review and summary
AJ Sundermann, J Chen, JK Miller… - Antimicrobial …, 2022 - cambridge.org
Background: Whole-genome sequencing (WGS) has traditionally been used in infection
prevention to confirm or refute the presence of an outbreak after it has occurred. Due to …
prevention to confirm or refute the presence of an outbreak after it has occurred. Due to …
NGSocomial Infections: High-resolution views of hospital-acquired infections through genomic epidemiology
AL Greninger, DM Zerr - Journal of the Pediatric Infectious …, 2021 - academic.oup.com
Hospital outbreak investigations are high-stakes epidemiology. Contacts between staff and
patients are numerous; environmental and community exposures are plentiful; and patients …
patients are numerous; environmental and community exposures are plentiful; and patients …
Economic and health impact modelling of a whole genome sequencing-led intervention strategy for bacterial healthcare-associated infections for England and for the …
JM Fox, NJ Saunders, SH Jerwood - Microbial Genomics, 2023 - microbiologyresearch.org
Bacterial healthcare-associated infections (HAIs) are a substantial source of global morbidity
and mortality. The estimated cost associated with HAIs ranges from 35to 45 billion in the …
and mortality. The estimated cost associated with HAIs ranges from 35to 45 billion in the …
The impact of genomics on precision public health: beyond the pandemic
Precision public health has been defined in many ways [1]. It can be viewed as an emerging
multidisciplinary field that uses genomics, big data, and machine learning/artificial …
multidisciplinary field that uses genomics, big data, and machine learning/artificial …
Unsuspected Clonal Spread of Methicillin-Resistant Staphylococcus aureus Causing Bloodstream Infections in Hospitalized Adults Detected Using Whole Genome …
BM Talbot, NF Jacko, RA Petit III… - Clinical Infectious …, 2022 - academic.oup.com
Background Though detection of transmission clusters of methicillin-resistant
Staphylococcus aureus (MRSA) infections is a priority for infection control personnel in …
Staphylococcus aureus (MRSA) infections is a priority for infection control personnel in …
Staphylococcus brunensis sp. nov. isolated from human clinical specimens with a staphylococcal cassette chromosome-related genomic island outside of the rlmH gene …
V Kovařovic, A Finstrlová, I Sedláček… - Microbiology …, 2023 - Am Soc Microbiol
Novel species of coagulase-negative staphylococci, which could serve as reservoirs of
virulence and antimicrobial resistance factors for opportunistic pathogens from the genus …
virulence and antimicrobial resistance factors for opportunistic pathogens from the genus …
Novel cassette chromosome recombinases CcrA8B9 catalyse the excision and integration of the staphylococcal cassette chromosome mec element
J Xiao, J Huang, X Xue, C Wang, Y Sun… - Journal of …, 2023 - academic.oup.com
Objectives A defining feature of MRSA is the SCC mec element. The excision and
integration of SCC mec elements are catalysed by Ccr recombinases. Currently, seven ccrA …
integration of SCC mec elements are catalysed by Ccr recombinases. Currently, seven ccrA …
Everybody nose: molecular and clinical characteristics of nasal colonization during active methicillin-resistant Staphylococcus aureus bloodstream infection
E Reategui Schwarz, A van de Guchte… - BMC Infectious …, 2022 - Springer
Background Healthcare-associated infections pose a potentially fatal threat to patients
worldwide and Staphylococcus aureus is one of the most common causes of healthcare …
worldwide and Staphylococcus aureus is one of the most common causes of healthcare …
Whole Genome Sequencing Applications in Hospital Epidemiology and Infection Prevention
M Doll, AL Bryson, TN Palmore - Current Infectious Disease Reports, 2024 - Springer
Abstract Purpose of Review Whole genome sequencing is increasingly used in
epidemiologic surveillance in healthcare centers, shedding new light on the transmission of …
epidemiologic surveillance in healthcare centers, shedding new light on the transmission of …