Feature-extraction and analysis based on spatial distribution of amino acids for SARS-CoV-2 Protein sequences

RK Rout, SS Hassan, S Sheikh, S Umer… - Computers in biology …, 2022 - Elsevier
Background and objective The world is currently facing a global emergency due to COVID-
19, which requires immediate strategies to strengthen healthcare facilities and prevent …

GeneAI 3.0: powerful, novel, generalized hybrid and ensemble deep learning frameworks for miRNA species classification of stationary patterns from nucleotides

J Singh, NN Khanna, RK Rout, N Singh, JR Laird… - Scientific reports, 2024 - nature.com
Due to the intricate relationship between the small non-coding ribonucleic acid (miRNA)
sequences, the classification of miRNA species, namely Human, Gorilla, Rat, and Mouse is …

Multifactorial feature extraction and site prognosis model for protein methylation data

M Khandelwal, R Kumar Rout, S Umer… - Briefings in …, 2023 - academic.oup.com
Integrated studies (multi-omics studies) comprising genetic, proteomic and epigenetic data
analyses have become an emerging topic in biomedical research. Protein methylation is a …

Protein-protein interaction prediction from primary sequences using supervised machine learning algorithm

M Khandelwal, RK Rout, S Umer - 2022 12th International …, 2022 - ieeexplore.ieee.org
Protein-Protein Interactions (PPI) study is significant to comprehending cellular biological
functions. Though there are different experimental techniques to predict PPIs, detecting PPIs …

Identification of discriminant features from stationary pattern of nucleotide bases and their application to essential gene classification

RK Rout, S Umer, M Khandelwal, S Pati, S Mallik… - Frontiers in …, 2023 - frontiersin.org
Introduction: Essential genes are essential for the survival of various species. These genes
are a family linked to critical cellular activities for species survival. These genes are coded …

Preliminaries on the accurate estimation of the Hurst exponent using time series

G Millán, R Osorio-Comparán… - 2021 IEEE International …, 2021 - ieeexplore.ieee.org
This article explores the required amount of time series points from a high-speed computer
network to accurately estimate the Hurst exponent. The methodology consists in designing …

Unsupervised learning for feature representation using spatial distribution of amino acids in aldehyde dehydrogenase (aldh2) protein sequences

M Khandelwal, S Sheikh, RK Rout, S Umer, S Mallik… - Mathematics, 2022 - mdpi.com
Aldehyde dehydrogenase 2 (ALDH2) enzyme is required for alcohol detoxification. ALDH2
belongs to the aldehyde dehydrogenase family, the most important oxidative pathway of …

Traffic flows analysis in high-speed computer networks using time series

G Millán - arXiv preprint arXiv:2103.03984, 2021 - arxiv.org
This article explores the required amount of time series points from a high-speed traffic
network to accurately estimate the Hurst exponent. The methodology consists in designing …

[PDF][PDF] A vicenary analysis of SARS-CoV-2 genomes

SS Hassan, RK Rout, KS Sahoo, N Jhanjhi… - Comput Mater …, 2021 - cdn.techscience.cn
Coronaviruses are responsible for various diseases ranging from the common cold to
severe infections like the Middle East syndromes and the severe acute respiratory …

Extraction of sequence-based features for prediction of methylation sites in protein sequences

M Khandelwal, N Shabbir, S Umer - … intelligence technologies for …, 2022 - taylorfrancis.com
Protein methylation, a form of post translational modifications (PTM), plays a significant role
in numerous cellular methods. Prediction of protein methylation sites is significant to …